Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1249 ATGGCTATGGAGAACGTGGGGAGTTTAGACGCGGCCATTGAGCAATTGCTGAATGCGGAGAAGCATGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACCGAAATTTTACGGTTGTGCTTCGAAGCGCGTGCCTGGAAAACTCTCAATGACCAGATTGCTCTCTTGTCCAAACGACGTGGCCAGCTTAAGCAGGCTGTGACAGCGATGGTCCAACAGGCTATGCAATATACTGATGAGACACCGGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGAAAGATATACGTCGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACTGCCAGGATTATGTTCGTGCACAGATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGACGCTGATGTTACAAAAGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATTCCATCTCTACCAGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCTTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCCCCGCATGATCCAATGCAGTCAAGTCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATCAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCCAAGGATAGCAATGACGTTCTTATCTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA 1332 0.4234 MAMENVGSLDAAIEQLLNAEKHARLAGDVAATRNAVTEILRLCFEARAWKTLNDQIALLSKRRGQLKQAVTAMVQQAMQYTDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDCQDYVRAQILSRKISTRVFDADVTKEKKKPKEGDNVVEEAPADIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENLAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENQSNLGKNLGEKAAEDLRERVIEHNIIVISKYYGRITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLISWAANLERLLDLVEKSCHQIHKETMVHKAALKV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1249 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 3 442 IPR040134 -
Gso6g1249 443 Pfam PCI domain 292 400 IPR000717 -
Gso6g1249 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 3 442 - -
Gso6g1249 443 SMART PINT_4 333 419 IPR000717 -
Gso6g1249 443 Gene3D - 331 408 IPR036388 -
Gso6g1249 443 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 406 438 IPR040896 -
Gso6g1249 443 SUPERFAMILY "Winged helix" DNA-binding domain 332 408 IPR036390 -
Gso6g1249 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 419 - -
Gso6g1249 443 ProSiteProfiles PCI domain profile. 234 404 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1249 Gso-Chr6 12187238 12193204 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1249 K03035 - gmx:100801382 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1821 4 48441783 48447533 Gso6g1249 6 12187238 12193204 GST