Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1215 ATGACGAAGCAGAAAATTCGCAACGCTCTTTTGGTGCACTTGGTGATTCTCTTCTTCTTTTCTACATCGGTTGTTTCAGCGAGAGTTGTGTCTCTCTTGCAGAACTACGGGAACCCGATTTTCAGATCAAATTTTCATTCTATTTACGACACTTCCAAGTACGGTGTGTTTCAACTGAGTAACGGGTTGGGTAAAACGCCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAAATGGTCATTAAGGAAACGGCTGATGCACTGGTATCAACGGGGTTGGCTGATTTAGGTTATGTGTATGTCAACATAGATGATTGCTGGTCTTCTGTGACAAGAAATCTGAAGGGTCAACTGGTTCCTGATCATAAGACATTTCCATCTGGAATCAAAGCTCTAGCAGATTATGTACATGGAAAGGGACTCAAGCTTGGCATATATTCTGATGCTGGGGTTTTTACATGTCAAGTCCGGCCAGGATCAATTTTCCATGAAACAGATGATGCAGATTTATTTGCCTCTTGGGGTGTAGATTATTTGAAGTATGACAATTGTTACAATCTGGGCATCCCTCCAAAAGAACGATATCCGCCTATGCGTGATGCTCTCAATGCGACTGGGCAGAAGATTTTCTATTCACTCTGTGAATGGGGCGTTGAGGACCCTGCTTTGTGGGCAGACAAGGTTGGTAACAGTTGGCGCACAACTGGAGACATCAATGATTCATGGGCAAGCATGACAACCATTGCTGATCTTAATGATAAGTGGGCTGCATATGCTGGGCCTGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAATGGAGGCATGACTTACCAGGAATATCGTGCTCACTTCAGCATCTGGGCTTTAGCAAAGGCTCCTCTATTGATTGGCTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTGAGCAATAAAGAAGTCATTGCCATCAATCAAGACTCTCTTGGAGTCCAGGGAAGGAAAGTTCAAGTTTCTGGAGCAGATGGTTGCAGACAGGTTTGGGCAGGTCCTTTGTCAGGAAACCGATTGGCTGTTGCTCTTTGGAATCGGTGCTCAAAAGTAGCTACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGGGTTCATGTTTCTGTGAGGGATTTGTGGCAGCACAAGGTAGTAACTGGAGATGCAGTGTCATCATTCAGTGCTCGAGTTGATATCCACGACTGTCAACTGTACATTTTTGCTCCATTTACAGTATCCCACTCTGTAGAGTAG 1296 0.4421 MTKQKIRNALLVHLVILFFFSTSVVSARVVSLLQNYGNPIFRSNFHSIYDTSKYGVFQLSNGLGKTPQMGWNSWNFFACNINEMVIKETADALVSTGLADLGYVYVNIDDCWSSVTRNLKGQLVPDHKTFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSIFHETDDADLFASWGVDYLKYDNCYNLGIPPKERYPPMRDALNATGQKIFYSLCEWGVEDPALWADKVGNSWRTTGDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTAETLEILSNKEVIAINQDSLGVQGRKVQVSGADGCRQVWAGPLSGNRLAVALWNRCSKVATITASWEALGLESGVHVSVRDLWQHKVVTGDAVSSFSARVDIHDCQLYIFAPFTVSHSVE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1215 431 CDD GH27 67 329 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 61 80 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 97 112 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 138 159 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 172 189 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 199 217 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 264 283 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PRINTS Glycosyl hydrolase family 27 signature 285 306 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 43 421 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 ProSitePatterns Alpha-galactosidase signature. 102 118 IPR000111 GO:0004553|GO:0005975
Gso6g1215 431 Pfam Alpha galactosidase C-terminal beta sandwich domain 345 420 IPR041233 -
Gso6g1215 431 Gene3D Aldolase class I 59 331 IPR013785 -
Gso6g1215 431 PANTHER ALPHA-GALACTOSIDASE 3 43 421 - -
Gso6g1215 431 Gene3D - 332 423 IPR013780 -
Gso6g1215 431 Pfam Alpha galactosidase A 66 329 IPR002241 GO:0004553|GO:0005975
Gso6g1215 431 SUPERFAMILY (Trans)glycosidases 59 329 IPR017853 -
Gso6g1215 431 SUPERFAMILY Glycosyl hydrolase domain 324 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1215 Gso-Chr6 11815887 11822969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1215 4 429 Glycoside Hydrolase AT3G56310 70.766 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1215 K07407 - gmx:100784072 895.19