Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1032 ATGAGTCGCCGTGGCATGGACGACGACGATGAGGAGGAGTACGAGGAGGAGGACGAGCAGGTCGCCGACTTCGACGACGAGGAGGAGGAGGACAACCACCGAGGACGCGGGGGTGGTGGCGGCAGGAAGAGGAGAAGATCTGGATTCATTGACGACGACGCCGAAGAGGTCGATGAGGACGAGGACGAGGAGGACGACGATGACGAGGATTTCGATGGACGGGGTGGTGGTGGCGGTCGGAGGCGCCAGTACAAGAAGGTTTCCGCTTCTAATTTCTTCGACGAAGAGGCCGTGGTGGATAGTGATGAGGAAGAGGAAGAAGAGGAGGGAGAAGACGACTTCATCGTTGAAGGTGGAGCGGATCTGCCAGAAGAAGATGATGGGAGAAAGATGCGTAGTAGCCGTATGCTGCCACACCACCAAGAGGATCATGAAGATCTTGAAGCTATGGCCAGAAGCATCCAGGAACGATATGGAAGGCGCCTAACAGATTATGATGAAGAAACAACAGACGTAGAGCAACAAGCCCTTTTGCCATCTGTGAGAGATCCAAAGCTGTGGATGGTCAAATGTGCAATTGGTCGTGAGAGGGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGATCAGCTATTGCTCTCGATCATCTCAAAAACTATATATACGTGGAAGCAGATAAAGAAGCCCATGTCAGAGAGGCTTGCAAAGGTCTACGCAATATATTTGGCCAAAAAATAACACTTGTTCCAATCAGAGAAATGACTGATGTTTTGTCAGTTGAAAGCAAAGCTATTGATCTTGCTAGAGATACTTGGGTCAGAATGAAAATTGGGACTTATAAAGGGGACCTTGCCAAAGTAGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTCAAATTAATTCCAAGGATAGACTTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGTTTTATGAATGTTGATGAAGCAAGGGAACTGCATATCCGTGTGGAGCATAGACGCGATGCCTATGGGGAACGATTTGATGCAATTGGAGGCATGATGTTCAAAGATGGATTCTTATATAAAACTGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACTTTTGATGAGCTTGAAAAATTTCGTAAACCGGGTGAGAGTGGAGACGGGGACGTAGCTAGTCTATCAACTTTGTTTGCAAACAGGAAGAAAGGCCATTTTATGAAAGGTGATGCTGTAATTGTTATAAAGGGAGATTTAAAGAACTTGAAGGGGAAGGTAGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATGGAGGATCTTCCAAAAACTATTGCTGTAAATGAAAAGGAACTTTGTAAATATTTTGAACCAGGAAACCACGTTAAGGTTGTTTCTGGTGCTCAAGAGGGGGCTACGGGCATGGTTGTGAAGGTGGAGCAGCATGTGTTGATCTTAATATCTGATACAACAAAAGAGCATATCCGTGTATTTGCAGATGATGTTGTAGAAAGTTCAGAAGTAACTACTGGAGTTACAAGAATTGGGGACTATGAACTTCGCGATCTTGTATTGCTAGATAATAATAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGATTCCTGACAGACCTGAAGTTGTGCTTATTAAATTAAGAGAGATCAAATGCAAGATAGATAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCGTCAAAGGATGTTGTGCGGATCGTTGATGGTCCCTGCAAAGGAAAACAAGGTCCTGTGGAGCACATATATAGGGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACACGCAGGCTTTATATGTGCTAAGGCCCAATCGTGTGTAGTTGTGGGAGGTTCACGCTCCAGTGGTGAAAGAAATGGTGATGCCTACTCAAGATTTGCCAGTCTTAGAAGTCCAAGTCGTATTCCACCGTCCCCAAGGAGGTTTTCTCGAGGAGGGCCAATGGATTCTGGAGGGAGACATAGGGGTGGAAGGGGCCATGATAGTTTGGCCGGGACAACCGTTAAAGTACGCCAGGGTCCCTATAAAGGTTACCGTGGGCGTGTTATAGATGTTAAAGGCACAACAGTTCGTGTTGAGTTGGAATCCCAAATGAAGGTTGTGACAGTTGACCGCAACCATATATCTGACAATGTGGCTGTAACCCCATATCGTGATACATCTCGCTATGGAATGGGAAGTGAAACACCAATGCATCCTTCTCGAACTCCCTTACATCCATATATGACTCCAATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGAACACCTATGCATAGCCGAGCATGGAATCCTTATACTCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCCAGTCCACAGTATCAGCCTGGAAGCCCTCCTTCACGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAGCACTCCCGGTGGAAATTATAGTGAAGCTGGAACACCGCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCATATTTACCATCAACACCTGGTGGACAGCCTATGACACCAAGTTCAGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGCACAGGTGGTATGGACATGATGTCTCCAGTTTTAGGTGGGGAAAACGAAGGGCCATGGTTTATCCCAGATATATTGGTCAACGTACACAGGGCTGGAGAGGAATCTATTGGAGTTATAAGAGAGGCTCTCCCGGATGGCTCTTACAGGGTAGGTCTTGGATCAAGTGGTAATGGTGAAACGATTACAGCCCTTCCTAATGAAATGGAGGCTGTGGTACCAAGAAAATCAGACAAAATAAAGATTATGGGTGGGGCATTGCGTGGTGCAACCGGCAAGTTGATTGGTGTAGATGGTACGGATGGAATTGTAAAGGTAGATGACACATTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTGGCTCAACCATGA 3120 0.4561 MSRRGMDDDDEEEYEEEDEQVADFDDEEEEDNHRGRGGGGGRKRRRSGFIDDDAEEVDEDEDEEDDDDEDFDGRGGGGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRKMRSSRMLPHHQEDHEDLEAMARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGKVEKVDEDNVHIRPEMEDLPKTIAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGIPDRPEVVLIKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGERNGDAYSRFASLRSPSRIPPSPRRFSRGGPMDSGGRHRGGRGHDSLAGTTVKVRQGPYKGYRGRVIDVKGTTVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMHSRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGENEGPWFIPDILVNVHRAGEESIGVIREALPDGSYRVGLGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1032 1039 Gene3D - 420 477 IPR014722 -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 53 72 - -
Gso6g1032 1039 Pfam KOW motif 710 740 IPR005824 -
Gso6g1032 1039 Pfam KOW motif 480 505 IPR005824 -
Gso6g1032 1039 SMART kow_9 986 1013 IPR005824 -
Gso6g1032 1039 SMART kow_9 477 504 IPR005824 -
Gso6g1032 1039 SMART kow_9 706 733 IPR005824 -
Gso6g1032 1039 SMART kow_9 274 301 IPR005824 -
Gso6g1032 1039 SMART kow_9 425 452 IPR005824 -
Gso6g1032 1039 SMART kow_9 601 628 IPR005824 -
Gso6g1032 1039 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 26 1037 - -
Gso6g1032 1039 Gene3D - 690 756 IPR014722 -
Gso6g1032 1039 PIRSF Spt5 2 1039 IPR017071 GO:0006357|GO:0032784
Gso6g1032 1039 MobiDBLite consensus disorder prediction 891 905 - -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 657 709 - -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 1 130 - -
Gso6g1032 1039 CDD KOW_Spt5_2 426 476 IPR041975 -
Gso6g1032 1039 SUPERFAMILY Translation proteins SH3-like domain 418 456 IPR008991 -
Gso6g1032 1039 Gene3D - 274 316 IPR014722 -
Gso6g1032 1039 SMART nusgn_4 183 269 IPR006645 GO:0140673
Gso6g1032 1039 ProSitePatterns Ribosomal protein L24 signature. 429 446 IPR005825 GO:0003735|GO:0005840|GO:0006412
Gso6g1032 1039 CDD NGN_Euk 185 267 IPR039385 -
Gso6g1032 1039 CDD KOW_Spt5_4 605 647 IPR041977 -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 863 882 - -
Gso6g1032 1039 CDD KOW_Spt5_5 706 754 IPR041978 -
Gso6g1032 1039 Pfam Spt5 transcription elongation factor, acidic N-terminal 92 179 IPR022581 -
Gso6g1032 1039 Pfam Early transcription elongation factor of RNA pol II, NGN section 185 266 IPR005100 -
Gso6g1032 1039 CDD KOW_Spt5_1 278 315 IPR041973 -
Gso6g1032 1039 CDD KOW_Spt5_6 980 1037 IPR041980 -
Gso6g1032 1039 Gene3D - 165 267 IPR036735 GO:0006355
Gso6g1032 1039 MobiDBLite consensus disorder prediction 96 121 - -
Gso6g1032 1039 Gene3D - 480 529 IPR014722 -
Gso6g1032 1039 PANTHER SUPPRESSOR OF TY 5 26 1037 IPR039659 GO:0006357|GO:0032784
Gso6g1032 1039 CDD KOW_Spt5_3 477 527 IPR041976 -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 764 784 - -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 8 28 - -
Gso6g1032 1039 MobiDBLite consensus disorder prediction 799 922 - -
Gso6g1032 1039 SUPERFAMILY Translation proteins SH3-like domain 469 528 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1032 Gso-Chr6 10064474 10073087 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1032 K15172 - gmx:100801380 1894.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2019 4 50530924 50540032 Gso6g1032 6 10064474 10073087 GST