Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1030 ATGAGTTTTAACCTTGGCACATGGAGAAACAACCCATCACATTGGTTTTGTTCCATAAGGAACCACATTCAGCAAGGATCATTGAGATGTGCTCTTCTTGCGTATAAACAAACCCGGCATGAAGGAGTATATGATTCCAGCGTTGCCCCTCTGTTATTCAAGGCTTGCGCTTCTCTTCCATTCCTTCATTACGTGAAGGCCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGAGAGCGACGTGATCATCGGAACCGCATTGCTCACAACTTACTCCAAATGCGGTGTCGTTAGGGATGCGCGTAATCTGTTTGACACAATGCCTGAGAGAAATGTTGTGACTTGGAATGCCATGATCAGTGGGTACTTGAGAAATGGAGACACGGAATCTGCTTATCTTGTGTTTGAGAAGATGCAGGGGAAAACGCAAGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGTGATATTGCCACTGCTAGGAGGTTGTTTGATGAGGTTCCCCATGAGTTGAAGAATGTGGTGACATGGACTGTGATGGTTGATGGGTATGCTAGAATAGGGGAGATGGAAGCTGCCAGGGAGGTCTTTGAGATGATGCCTGAAAGGAATTGCTTTGTGTGGTCATCTATGATTCATGGGTACTTCAAGAAGGGCAATGTCACTGAGGCTGCGGCTGTTTTTGACTGGGTTCCGGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGCTATGTTCAGAATGGATTTGGTGAGAAAGCACTGCTAGCTTTTGAGGGAATGGGAGCTGAAGGATTTGAGCCGGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTGGGGCACCTGGATGTTGGTAAGCAAATCCATCACATGATAGAACACAAAGGGATAGTTGTAAATCCGTTTGTGTTGAGTGGATTGGTTGACATGTATGCCAAATGTGGTGACTTGGTCAATGCAAGGCTGGTATTTGAAGGGTTCACTGAGAAGAATATTTTCTGCTGGAATGCTATGATTTCAGGTTTTGCCATCAATGGAAAGTGCAGCGAGGTTCTTGAGTTTTTTGGCAGGATGGAGGAATCAAATATAAGGCCTGATGGTATCACCTTTCTTACTGTTCTTTCCGCTTGTGCTCATAGGGGTTTGGTCACTGAAGCTTTGGAAGTAATATCTAAAATGGAGGGATATAGAATTGAAATTGGCATCAAGCATTATGGATGCATGGTTGACCTATTGGGCAGAGCAGGGAGATTAAAAGATGCTTATGAGTTGATAGTAAGAATGCCAATGAAACCTAACGACACAGTTTTAGGGGCAATGCTTGGAGCATGCCGGATTCATTCAGATATGAACATGGCAGAACAAGTAATGAAGTTGATCTGTGAAGAGCCTGTTACAGGTGCTAGTTCTCACAATGTGCTTTTGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGGATGAAGAGGATCACGGTAGATGGAGGGTCTCAAAGGATACCCGGATGTAGTTCAATTATCTTTAGTGACTCTTGTGGATTTAAGTGCACAAGTCCCACATTAAAATCAATGGACTAA 1608 0.4397 MSFNLGTWRNNPSHWFCSIRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYELIVRMPMKPNDTVLGAMLGACRIHSDMNMAEQVMKLICEEPVTGASSHNVLLSNIYAASEKWEKAERMKRITVDGGSQRIPGCSSIIFSDSCGFKCTSPTLKSMD* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 172 IPR002885 -
Gso6g1030 535 Pfam PPR repeat family 337 385 IPR002885 -
Gso6g1030 535 Pfam PPR repeat family 110 140 IPR002885 -
Gso6g1030 535 Pfam PPR repeat family 238 284 IPR002885 -
Gso6g1030 535 PANTHER BNACNNG13520D PROTEIN 11 516 - -
Gso6g1030 535 SUPERFAMILY TPR-like 8 222 IPR011990 GO:0005515
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 177 207 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 113 139 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 209 231 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 375 406 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 144 168 IPR002885 -
Gso6g1030 535 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gso6g1030 535 Pfam PPR repeat 412 436 IPR002885 -
Gso6g1030 535 Pfam PPR repeat 177 207 IPR002885 -
Gso6g1030 535 Pfam PPR repeat 209 231 IPR002885 -
Gso6g1030 535 Pfam PPR repeat 144 168 IPR002885 -
Gso6g1030 535 Gene3D Tetratricopeptide repeat domain 14 141 IPR011990 GO:0005515
Gso6g1030 535 Gene3D Tetratricopeptide repeat domain 206 306 IPR011990 GO:0005515
Gso6g1030 535 Pfam E motif 454 516 IPR046848 -
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Gso6g1030 535 Gene3D Tetratricopeptide repeat domain 311 525 IPR011990 GO:0005515
Gso6g1030 535 Gene3D Tetratricopeptide repeat domain 142 205 IPR011990 GO:0005515
Gso6g1030 535 PANTHER OS01G0913400 PROTEIN-RELATED 11 516 - -
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 141 IPR002885 -
Gso6g1030 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1030 Gso-Chr6 10055795 10058191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1030 52 520 Glycoside Hydrolase AT3G49170 30.498 2.03e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1030 - - gmx:100802813 1090.87