Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1013 ATGTACCCATTATTGAAGCAAGCGCAAGGTCCTTACCCTTCTCTTTCATGTTGCTCTCTCCTCCTAAACCACTGTTTATCTCAAAAATCCCTTAACTTTGTCAAAATCGTGCATGCCCACTTCCTCAAATTGGGACTTAACACCTACACATATTTGGGTAATCGCTGCCTCGACCTTTACTCTGAGTTCGGCCACATTAACGATGCACTGAAGGTGTTTGATGATATTTCCCACAAGAACTCCACTTCCTGGAACATTTGCCTAAAAGGGTTGCTCAAAAGTGGCCAGCCTGGCAAGGCCTGCCACATGTTTGATGCGATGCCTGTTAGAGATGTCGTTTCTTGGAATTCCATGATTTCGGGTTATGCTTCCTGTGGGTATTTAAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAGGCACCGGTGTGAGACCAAGTGGGTTTACTTTCTCCATTTTGATGTCACTCGTGTCAAGTTCCCCTCATGCTAAGCAGATTCACTGTAGGATGATCAGAAGTGGCGTGGATTTGGATAATGTAGTGCTTGGGAATTCGTTAATAAATATTTATGGGAAGCTTGGTCTTGTTGAATATGCTTTTGGTGTGATTATGATTATGAAGCAGTTTGATGTTATATCTTGGAACTCTTTGATCTGGGCCTGTCATAGTGCTGGACACCATGAGTTGGCATTAGAGCAGTTCTATCGGATGAGAGGTGCTGAGTTGTTACCTGATCAGTTTACGTGTTCAGTGTTGATGAGTGTCTGTTCTAACTTGCGAGACTTGGACAAGGGTAAGCAGGTTTTTGCCTTTTGTTTCAAGATGGGATTTATTTATAATAGCATTGTATCCAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTCCGGCTATTTAAGAAACAAGATCAATGGGATTCACCTCTATGCAATTCCATGATTTCAAGTTTTGCTAGACACGATTTAGGGGAAAATGCTTTGCAACTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACAGAATACATGGTTAGCTCTCTCCTGAGTTCTGTTTCGATTTTCTTACCAGTTGAAGTGGGTAATCAAATCCATTCTTTGGTTCCTAAATTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTCGATATGTATGCTAAATTTGGGTTTATTGGTGATGCCTTGAATATCTTCAATGAAATGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGACTTACTATGGCAGAGTGTCTTTGACCATGGACCTCTTCAGGGAATTATTGACTAGAGAAGGCATACTACCAGATCGAATAACACTTACTGCAGTTCTACTAGCATGCAACTATGGGTTATTGGTTGATGAAGGAATCAAAATATTTTCCTCAATGGAGATGGAATTCGGAGTAAAACCCGGAGAAGAACATTATGCATGTGTTGTGGAGATGTTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCGTGTAGAACTACCTCTGACATTTGGAGGTCAATTCTTTCTGCATGTGCAATTTATGGAGACTTGCAAATTATAGAAGGAGTTGCAAAGAAAATAATGGATAGGGAATCACAGACATCCTTACCTTACTTGGTGTTGGCTCAAGCATATCAAATGAGGGGTAGATGGGATTCCATGGTTCGAATGAGGAAGGCTGTGGAAAATAGAGGTACTAAAGAGTTCATTGGACACAGTTGGATTGGAATAAGAAATAATGTGTACACTTTTGCGTCAAATCAATTACAGCATTATGGTGGCAAGGATCTATATCTGGTGTTGAATTTACTTGTCTGGGAGATGGAGACTGAAGGTTATGTCTAA 1893 0.4057 MYPLLKQAQGPYPSLSCCSLLLNHCLSQKSLNFVKIVHAHFLKLGLNTYTYLGNRCLDLYSEFGHINDALKVFDDISHKNSTSWNICLKGLLKSGQPGKACHMFDAMPVRDVVSWNSMISGYASCGYLSHALELFVEMQGTGVRPSGFTFSILMSLVSSSPHAKQIHCRMIRSGVDLDNVVLGNSLINIYGKLGLVEYAFGVIMIMKQFDVISWNSLIWACHSAGHHELALEQFYRMRGAELLPDQFTCSVLMSVCSNLRDLDKGKQVFAFCFKMGFIYNSIVSSAAIDLFSKCNRLEDSVRLFKKQDQWDSPLCNSMISSFARHDLGENALQLFVLTLRKNIRPTEYMVSSLLSSVSIFLPVEVGNQIHSLVPKLGFESDAVVANSLVDMYAKFGFIGDALNIFNEMKIKDLVSWNTIMMGLTYYGRVSLTMDLFRELLTREGILPDRITLTAVLLACNYGLLVDEGIKIFSSMEMEFGVKPGEEHYACVVEMLSKAGKLKEAIDIIETMPCRTTSDIWRSILSACAIYGDLQIIEGVAKKIMDRESQTSLPYLVLAQAYQMRGRWDSMVRMRKAVENRGTKEFIGHSWIGIRNNVYTFASNQLQHYGGKDLYLVLNLLVWEMETEGYV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1013 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Gso6g1013 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Gso6g1013 630 Pfam PPR repeat 488 512 IPR002885 -
Gso6g1013 630 Pfam PPR repeat 384 411 IPR002885 -
Gso6g1013 630 Pfam PPR repeat 315 339 IPR002885 -
Gso6g1013 630 Pfam PPR repeat 414 441 IPR002885 -
Gso6g1013 630 PANTHER OS03G0435200 PROTEIN 1 630 - -
Gso6g1013 630 Gene3D Tetratricopeptide repeat domain 34 162 IPR011990 GO:0005515
Gso6g1013 630 Gene3D Tetratricopeptide repeat domain 260 359 IPR011990 GO:0005515
Gso6g1013 630 Gene3D Tetratricopeptide repeat domain 364 461 IPR011990 GO:0005515
Gso6g1013 630 Gene3D Tetratricopeptide repeat domain 163 259 IPR011990 GO:0005515
Gso6g1013 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Gso6g1013 630 Pfam PPR repeat family 110 155 IPR002885 -
Gso6g1013 630 Gene3D Tetratricopeptide repeat domain 462 607 IPR011990 GO:0005515
Gso6g1013 630 PANTHER OS07G0578800 PROTEIN-RELATED 1 630 IPR045215 GO:0003723|GO:0009451
Gso6g1013 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Gso6g1013 630 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Gso6g1013 630 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Gso6g1013 630 Pfam Pentatricopeptide repeat domain 208 257 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1013 Gso-Chr6 9847615 9850116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1013 100 630 Glycoside Hydrolase AT3G49170 30.996 9.85e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1013 - - gmx:102663822 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2035 4 50744630 50747070 Gso6g1013 6 9847615 9850116 GST