Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0993 ATGGAGCCGCCGGAGTGCCCGGTATGTCTTCAATCCTTCGACGAGCGCGACGCAATTCCTCGTGTCTTATCATGTGGACACTCCGTCTGCGAAGCTTGCCTCGCGGAGCTTCCGCAGCGGTACCAGGACACTATTCGGTGCCCCGCCTGCACCCAACTCGTGAAGTACCCTTCTCAACAAGGCCCTTCCTCTCTCCCCAAAAACATTGACCTCCTCAGACTCTCCCTCCAACACTCCCCTTCCCCTTCCTCTTCCTCTTCCTCTGATCATTCCCAGATACCGAATCAACGCTCCACAACCAATTCTTGTTACTATCACCCTCCCTTCTCGTCCCATGAGCTTTATGTTACATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTAACGGACGATCATTGTATTGGCTGGTTCAGTTCGACCAAGGGTAGGGGTTGCTTCGGAGTTAACCGTAGTGTAAGTCTTGCTCCCATTGTTTGTTTCCCTCCTCGGGATCGTTCCAAGTTTAGGTTTAGTTATGTCGCATGGGTGATTAAGTGTTTGGAGGGGATGAACGAGGGTGCGAAGGAGGAGTTGGCGTTGATTCTAGAAGCTTCCGTGAGGCAGGGGAGGATGTGTAGGGTTTATGGTTTGTGGAGTGAAGGGGTGGAAGGGCCTCTGTATATGGTGTGTGAGAGGCAAAGATGTAATTTATTGGACAAGTTTGGTGAATTGGGAAATGGGTTTCTTGCTGTGAGTGAGGGTGGTTTGGAGTTGGATAAAGGTGGGATTTTTAGTTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTGCTTTGCATTTGGAAGGGTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGGATTTGTGTTGATTTGAATGAGGCATTGATGCTGGCAAGGAAGTTTGTGAATGCTGTTTCCGTTGAACACAAAGAAGAAGCAATGTGTAAGGATTGCTTGGAAAATGAGGTTTTTGCAAGCCCTGAGGTTTTGTATGAGTTGTTGCACAAGAGGGGCACTGCTCCCGATAGTGGGCATTCGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCTTGTGTACTGCTGCGGCTTCTTATTGGAAATGTGCTGCCTTGGAATACCTTGGAAATGAAGGAAGAGAATGACGGTGATAGCTCTGCTAGTTATGCATGCTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGCAGATTCTTTGTAAATGTTTGGATGTCAATCCAGGAAACCGGCCAGATGTGGTGGATGTAAGGAAATGCATTCAGAATATGTTAGTCAAACCGCAATTTGATTTTCTGGGCAACTTGGAGGTCACGATAAGTAGGGACTACACAGGTCTCTGCTTGGTTCTAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGAACTGATTGAACATGAGTTGTGGGAGAAAGAAATTGGTGGTCAACCAAATGTTGTTCAAGATGGCAAAGGCAAATCTGATGAGGACTTTGCTGCTGGCTTACCTAAGGGAATGACTGAACTCAAAGATCTGCAGGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGGAGGTATCTATTGAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCTTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATCTGGGGAATTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGTTGTTTCCAAAAATCATTCTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGCGATGAGGTTCTTTACAGCGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCACTGACAGTTTTGGGGGAAGATCCGCCTGCAGAGATGAAGTCTATCTTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCTGCACATGAGAATGGATGCATAAAGGTCTGGAGAAACGATGTGTTCATGAATTCCAAAACATTGCATAAAGGGGCCATTTTTGCTATGAGTATGCAGGGAAAATGCCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTTGAACTGGATGTCAAAGCATATGGATCCATTCCTTGCAGTGCTGTTGCAACAGCTATATTATGCAGCCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATCAAGGAAAATCTCGGCCGCGTTCAGAAGAGTTTAGCCGACTTCACGAGCTTAAACTACTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAATGCCTTCGAGCCGCAAATTCAGACGCTCTCCGATGAACAGCTGGCCGCGAAAACCGCCGAATTTCGCCGCCGGCTCGCGCGAGGGGCCACCATTGCCGATATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAGCTTGGAATGCGCCATTTCGATGTTCAGATTATTGGTGGAGCAGTGTTGCATGATGGTTCCATCGCTGAGATGAAAACGGGGGAAGGTAAAACCTTGGTTTCCACGCTAGCGGCTTATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGAGAGGAATGAATTCTGAAGAACGGAGACTCAACTACGGACGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATAGTGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGCTAATCAGTGGTGAGGCTAGTAAAGATGCCGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGATCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACTGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTAGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTAAATGCTAGACCCAAGTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGCGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCAAATGTTGAACTTGCAGATGAGGCTATTTCACAGAAGGTGCTTCCAAAGGTAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAACCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTGTTGAAATGAGCCTTTCATATAGTTTGGAGGGGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCCCTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACACGATTTATGGTCAGTTTGCAGGATGAGATGTTTCAGAAATTCAATTTTGATACTGAATGGGCAGTCAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCAATTGTAAAGCAGCTTTTGGCACTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACATATATTCCAGTACATGCAAGCGGTGGTGGATGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTGTGACTGTTGGTGGAAAGTTGTTGCGTGAATCTTTAGGAGGAATTAGTGATGATACTTTGCTAAATTCACTTGGGCTAGTGAATGATTTGAGTTCAGTTGATATCGTCAACTTTTCCCTTCCGAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATTCGCAGGAAGAGTTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGGGAATGGGAAGTACCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGACGGTTGCCGATTTTTTATCTCAATGCTGAGTGCAACTAGAAGGTTAACTGTAGAAGCACTGTTGCGGTATTGGGCATCTCCAATGGAATCCCAAGAACTATTTTTATCATGA 5448 0.4381 MEPPECPVCLQSFDERDAIPRVLSCGHSVCEACLAELPQRYQDTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHSPSPSSSSSSDHSQIPNQRSTTNSCYYHPPFSSHELYVTWKDWILPHDAVLTDDHCIGWFSSTKGRGCFGVNRSVSLAPIVCFPPRDRSKFRFSYVAWVIKCLEGMNEGAKEELALILEASVRQGRMCRVYGLWSEGVEGPLYMVCERQRCNLLDKFGELGNGFLAVSEGGLELDKGGIFSFLMIGKGICEAVLALHLEGLVAGCLGLSCFSFDELGGICVDLNEALMLARKFVNAVSVEHKEEAMCKDCLENEVFASPEVLYELLHKRGTAPDSGHSRYPIGYGSDVWSLACVLLRLLIGNVLPWNTLEMKEENDGDSSASYACWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDVVDVRKCIQNMLVKPQFDFLGNLEVTISRDYTGLCLVLGELCLLPKQSSNELIEHELWEKEIGGQPNVVQDGKGKSDEDFAAGLPKGMTELKDLQGHLDCISGLAVGGRYLLSSSFDKTVHVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWYEKKDWRFSGIHSLVVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDPPAEMKSILAITVDRHLLVAAHENGCIKVWRNDVFMNSKTLHKGAIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKAYGSIPCSAVATAILCSQGKLYVGYADKSIKENLGRVQKSLADFTSLNYWVVRDYYRLVNSVNAFEPQIQTLSDEQLAAKTAEFRRRLARGATIADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRLNYGRDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIDLAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKVKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEGLEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFVTVGGKLLRESLGGISDDTLLNSLGLVNDLSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWASPMESQELFLS* 1816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0993 1815 SUPERFAMILY WD40 repeat-like 528 819 IPR036322 GO:0005515
Gso6g0993 1815 Gene3D - 844 1221 IPR027417 -
Gso6g0993 1815 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 819 1813 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 SUPERFAMILY Helical scaffold and wing domains of SecA 1533 1627 IPR036266 -
Gso6g0993 1815 SUPERFAMILY Pre-protein crosslinking domain of SecA 1052 1173 IPR036670 GO:0016020|GO:0017038
Gso6g0993 1815 Pfam SecA Wing and Scaffold domain 1527 1802 IPR011116 GO:0016020|GO:0017038
Gso6g0993 1815 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 704 IPR001680 GO:0005515
Gso6g0993 1815 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Gso6g0993 1815 PRINTS G protein beta WD-40 repeat signature 642 656 IPR020472 -
Gso6g0993 1815 PRINTS G protein beta WD-40 repeat signature 682 696 IPR020472 -
Gso6g0993 1815 CDD SF2_C_secA 1226 1497 IPR044722 -
Gso6g0993 1815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gso6g0993 1815 TIGRFAM secA: preprotein translocase, SecA subunit 850 1621 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 Gene3D - 1223 1529 IPR027417 -
Gso6g0993 1815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 911 1074 IPR014001 -
Gso6g0993 1815 SMART ring_2 6 50 IPR001841 -
Gso6g0993 1815 CDD DEXDc_SecA 864 1220 - -
Gso6g0993 1815 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 819 1813 - -
Gso6g0993 1815 ProSiteProfiles Protein kinase domain profile. 136 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0993 1815 Hamap Protein translocase subunit SecA [secA]. 824 1805 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Gso6g0993 1815 SMART SecA_PP_bind_2 1053 1164 IPR011130 GO:0016020|GO:0017038
Gso6g0993 1815 Pfam RING-type zinc-finger 6 48 IPR027370 -
Gso6g0993 1815 Pfam SecA DEAD-like domain 840 1207 IPR011115 GO:0005524|GO:0016020|GO:0017038
Gso6g0993 1815 ProSiteProfiles SecA family profile. 825 1529 IPR014018 -
Gso6g0993 1815 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gso6g0993 1815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1510 IPR027417 -
Gso6g0993 1815 Pfam SecA preprotein cross-linking domain 1064 1164 IPR011130 GO:0016020|GO:0017038
Gso6g0993 1815 Gene3D - 524 615 IPR015943 GO:0005515
Gso6g0993 1815 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 573 IPR001680 GO:0005515
Gso6g0993 1815 SMART serkin_6 138 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0993 1815 Gene3D - 1054 1174 - -
Gso6g0993 1815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 832 1221 IPR027417 -
Gso6g0993 1815 Gene3D Helical scaffold and wing domains of SecA 1532 1634 - -
Gso6g0993 1815 SUPERFAMILY RING/U-box 4 59 - -
Gso6g0993 1815 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Gso6g0993 1815 SMART WD40_4 740 777 IPR001680 GO:0005515
Gso6g0993 1815 SMART WD40_4 658 695 IPR001680 GO:0005515
Gso6g0993 1815 SMART WD40_4 613 655 IPR001680 GO:0005515
Gso6g0993 1815 SMART WD40_4 527 564 IPR001680 GO:0005515
Gso6g0993 1815 SMART WD40_4 567 607 IPR001680 GO:0005515
Gso6g0993 1815 SMART WD40_4 698 739 IPR001680 GO:0005515
Gso6g0993 1815 Pfam WD domain, G-beta repeat 662 695 IPR001680 GO:0005515
Gso6g0993 1815 Pfam WD domain, G-beta repeat 531 564 IPR001680 GO:0005515
Gso6g0993 1815 PRINTS SecA protein signature 885 909 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 923 937 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 939 949 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 992 1012 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 1145 1167 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 1182 1199 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 PRINTS SecA protein signature 1219 1232 IPR000185 GO:0005524|GO:0006605|GO:0006886
Gso6g0993 1815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Gso6g0993 1815 MobiDBLite consensus disorder prediction 77 98 - -
Gso6g0993 1815 Gene3D - 616 838 IPR015943 GO:0005515
Gso6g0993 1815 SUPERFAMILY Helical scaffold and wing domains of SecA 1701 1812 IPR036266 -
Gso6g0993 1815 Gene3D Helical scaffold and wing domains of SecA 1672 1805 - -
Gso6g0993 1815 CDD RING-HC_TRIM32_C-VII 5 51 - -
Gso6g0993 1815 SMART SecA_DEAD_2 830 1208 IPR011115 GO:0005524|GO:0016020|GO:0017038
Gso6g0993 1815 SUPERFAMILY Protein kinase-like (PK-like) 201 456 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0993 Gso-Chr6 9561557 9584493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0993 548 792 Acyl Lipid Metabolism Gene Families AT3G18860 28.405 6.71e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0993 K03070 - gmx:100793437 3601.99