Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0991 ATGATTAAGCTCTGTTCCCATAGAAGTAAAATATTTTCCAAATGGGTGGTGTTTACGAAAATGCACAGCGCAAGCGAGGCGATGATTCAGGATGTTGGAGAAGCAAGTGAAAGAGTGTGCAAGGTTATGATGACGTGTCCTACCCTCGGACTTGACACTGCTCTTAATCAAACCGGTGTTAGAGTTTCCCCTGATTTAGTTGAGAACGTTCTCAAGAGGTTCGAGAATGCGGGCATGCCAGCATTTCGGTTCTTTGAGTGGGCAGAGAAGCAGAGAGGTTACTCACATAGCATTAGGGCATACCACTTGATGATTGAATCTTTGGCCAAGATTAGACAGTACCAGATCGTGTGGGACCTTGTTAGTGCAATGAGGAAAAAGGGTATGCTAAATGTTGAAACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTTGATGAGGCTGTTTACACCTTTAATGTTATGGATAAGTATGACGTGGTTCCGAATCTTGCTGCATTTAATGGTTTGCTGAGTGCTTTGTGCAAGTCCAACAATGTAAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGGGTCAGTTTGTGCCGGACGAAAAAAGTTACAGCATTTTGCTTGAGGGGTGGGGAAAGGCTCCCAATCTTCCCCGGGCTAGGGAGGTTTTTAGAGAGATGGTTGAGGCGGGGTGCGACCCTGATGTCGTTACTTATGGTATCATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGATGTGGGCAATTGCAGGCCAACGTCGTTCATTTATAGTGTCTTGGTTCATACTTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACGTTCCTTGAGATGGCGAAGAAGGGAATCAAGGCTGATGTTGTGGCATATAATGCCTTGATTGGTGCATTTTGTAAAGTAAATAAGTTTAAAAATGTGCATAGGGTCTTGAAGGAGATGGAGAGCAATGGTGTCGCTCCTAATTCAAGGACCTGCAATGTTATTATAAGCAGTATGATTGGCCAAGGACAGACTGATAGAGCTTTCCGAGTCTTCTGCCGGATGATCAAGTTGTGTGAACCGGATGCTGACACATATACAATGATGATTAAAATGTTCTGTGAGAAAAATGAACTGGAGATGGCTCTGAAAATATGGAAGTATATGAAATCAAAACAGTTTGTTCCAAGCATGCACACCTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGACAATGCTGCAAAGGCTTGTGTTGTGATGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCACGAGAAAATGAATCTTCTCGTCAAGGAGCCTTTATATGATTAA 1446 0.4308 MIKLCSHRSKIFSKWVVFTKMHSASEAMIQDVGEASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGRLRQLLIKEGREDVLKFLHEKMNLLVKEPLYD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Gso6g0991 481 Pfam PPR repeat family 373 421 IPR002885 -
Gso6g0991 481 Pfam PPR repeat family 165 210 IPR002885 -
Gso6g0991 481 Pfam PPR repeat family 305 350 IPR002885 -
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Gso6g0991 481 Gene3D Tetratricopeptide repeat domain 265 353 IPR011990 GO:0005515
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 134 166 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 169 195 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 343 369 IPR002885 -
Gso6g0991 481 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Gso6g0991 481 Pfam PPR repeat 231 262 IPR002885 -
Gso6g0991 481 Gene3D Tetratricopeptide repeat domain 50 193 IPR011990 GO:0005515
Gso6g0991 481 Gene3D Tetratricopeptide repeat domain 194 264 IPR011990 GO:0005515
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Gso6g0991 481 SUPERFAMILY TPR-like 96 397 IPR011990 GO:0005515
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Gso6g0991 481 PANTHER OS03G0761300 PROTEIN 9 478 - -
Gso6g0991 481 Pfam PPR repeat 134 161 IPR002885 -
Gso6g0991 481 Pfam PPR repeat 273 302 IPR002885 -
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Gso6g0991 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 478 - -
Gso6g0991 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Gso6g0991 481 Gene3D Tetratricopeptide repeat domain 354 479 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0991 Gso-Chr6 9553268 9556574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0991 94 469 Glycosyltransferase AT1G05670 24.943 6.42e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0991 - - gmx:100790096 967.222