Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0930 ATGGATTTAAACCAAATCCAGTTAGCTTTACGCTGTTGTGGACGCTTTCAAGCTATCAAACATGCCAAATCACTCCACTCTCTTATAATAAAACTTGGCCTCTCAAATCACATTTTTCTCCTTAATAGCATCATCTCTGTCTACGCAAAGTGTTCCCGATTCGATGATGCACGAACCCTTTTCGACGAAATGCCTCACAGGAACATAGTTTCTTTCACAACAATGGTCTCTGCATTCACCAATTCTGGGAGACCCCACGAGGCTCTTACACTCTACAACCACATGCTGGAATCCAAAACCGTGCAACCCAATCAGTTTTTGTACTCTGCGGTTCTCAAGGCATGTGGTCTCGTGGGTGATGTTGAATTGGGCATGTTGGTCCACCAACATGTATCTGAAGCTAGGTTAGAGTTTGACACTGTTCTGATGAATGCCCTCTTGGACATGTACGTCAAATGTGGGAGCTTGATGGATGCCAAACGAGTTTTCCATGAAATCCCGTGTAAAAATTCTACTTCATGGAACACCCTCATTCTTGGACATGCTAAACAGGGTCTGATGAGAGATGCGTTTAATCTGTTTGATCAAATGCCAGAACCAGACCTTGTGTCTTGGAATAGCATCATTGCTGGTCTTGCAGATAATGCTAGCCCCCATGCATTGCAATTTCTTTCTATGATGCATGGGAAGGGCCTTAAACTTGATGCGTTCACATTCCCATGTGCCCTCAAAGCATGCGGTCTTCTTGGCGAGTTAACCATGGGGAGACAGATTCATTGTTGTATTATAAAGTCTGGGCTTGAGTGTAGCTGTTATTGTATATCATCATTGATTGATATGTATTCGAATTGCAAGCTATTAGATGAAGCAATGAAGATATTTGATAAGAACTCTCCTCTTGCTGAAAGCTTGGCAGTATGGAATTCTATGCTTTCTGGGTATGTTGCCAATGGGGATTGGTGGAGGGCACTCGGTATGATTGCTTGTATGCATCATTCTGGTGCACAGTTTGATTCCTATACCTTTAGTATTGCTTTAAAGGTCTGCATCTATTTTGATAACTTGAGGTTGGCATCTCAAGTGCATGGATTGATCATCACCCGTGGCTATGAGTTGGATCATGTTGTTGGAAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAGTGCATTAAGATTGTTTGAAAGGTTGCCAAATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGACTTGGTTTGGGAACATTAGTTTTTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTATCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATCTCTTCAAAGTGGCAAGCAAATTCATTCTTTCTGTCTTAAGAAGGGGTATGAATCAGAGAGAGTTATTACAACTGCTCTTACTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTATTTGACTGTCTTTATGAAATAGATACCATGAGTTGGACCGGGATTATTGTTGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATTAGTATTCTGCATAAGATGATAGAATCAGGTACAAAGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCATGTAGACATGCAGGCCTAGTTGAAGAGGCATGGACTATATTTAAGTCTATTGAAACAGAGCATGGATTGACACCATGCCCAGAACATTACAATTGTATGGTTGATATATTTGCTAAGGCAGGACGTTTTAAAGAAGCAAGAAACTTGATTAATGATATGCCATTTAAGCCTGACAAAACCATATGGTGCTCCTTGCTTGATGCCTGTGGAACTTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGCTTCAGTATATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTACGAGAAGCTGTAAGAAAAGTAGGTATAAAAGGAGCTGGAAAAAGCTGGATCGAGATATGTAAATAA 2061 0.4008 MDLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVRKVGIKGAGKSWIEICK* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Gso6g0930 686 Gene3D Tetratricopeptide repeat domain 483 686 IPR011990 GO:0005515
Gso6g0930 686 Gene3D Tetratricopeptide repeat domain 317 470 IPR011990 GO:0005515
Gso6g0930 686 Gene3D Tetratricopeptide repeat domain 2 120 IPR011990 GO:0005515
Gso6g0930 686 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 121 - -
Gso6g0930 686 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 83 682 - -
Gso6g0930 686 Pfam E motif 622 683 IPR046848 -
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 67 IPR002885 -
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Gso6g0930 686 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Gso6g0930 686 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
Gso6g0930 686 TIGRFAM PPR: pentatricopeptide repeat domain 580 603 IPR002885 -
Gso6g0930 686 TIGRFAM PPR: pentatricopeptide repeat domain 41 70 IPR002885 -
Gso6g0930 686 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gso6g0930 686 Pfam PPR repeat family 67 115 IPR002885 -
Gso6g0930 686 Gene3D Tetratricopeptide repeat domain 121 215 IPR011990 GO:0005515
Gso6g0930 686 Gene3D Tetratricopeptide repeat domain 216 301 IPR011990 GO:0005515
Gso6g0930 686 Pfam PPR repeat 378 403 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 508 536 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 579 603 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 142 169 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 173 199 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 306 334 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 275 296 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 479 500 IPR002885 -
Gso6g0930 686 Pfam PPR repeat 406 433 IPR002885 -
Gso6g0930 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gso6g0930 686 SUPERFAMILY TPR-like 39 661 IPR011990 GO:0005515
Gso6g0930 686 PANTHER BNAC03G28070D PROTEIN 83 682 - -
Gso6g0930 686 PANTHER BNAC03G28070D PROTEIN 10 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0930 Gso-Chr6 8950685 8955116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0930 1 684 Glycoside Hydrolase AT3G49170 30.329 8.53e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0930 - - gmx:100780678 1369.76