Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0797 ATGGACTCCGTTCCGTTTCGCGATGGTAACATACACACCATTCTCGACTCCCGTTATCTTCACTCTCCACTGGATGTTAATCATAGTTTGCACACTCATTCCTCGCTGATTCGGAGGCTTTCTCAAGAAAGGGAGTTAGAGGGCCACACTGGCTGTGTCAATGCGGTGGCTTGGAATTCCAAAGGTTCGTTACTGATATCTGGATCAGATGATCAACGGATCAATATTTGGAGCTATTCTGGCTGGAAACTTTTACATTCAATTGACACAGGACATACAGGAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTCAATTTGTCTCGCTTAAATGGGAGTGGATTTAGTGACAATGCCATCATTGCTCCATCTGCATATTATCAATGCCACACTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGGACTCTAAGGCAACATGATTTTCGGGAAGGCACCTCTTGTCCTCCAGCTGGATCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTAAGAAGTGGATCTAAAAGGTCGCTTGCTGATCCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGATATTAGTTCAACTAAACCACATTTGCTTCTTGTTGGTGGGAGTGACGCCTTCGCACGCTTATATGATAGAAGGATGCTTCCGCCTCTTAGCTCATGTCAGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTGCACTTAACTCATGTTACATTCAGTCCTGATGGGCACGAGGTTCTCCTCAGCTATAGTGGAGAGCACGTTTACTTGATGAATGTAAATCATGCTGGAGTGAAGGAGATGCAATATACTTCAGGAGATGAATCAAAGCTGATGACATACTCTCCGACAATTAATGGGTCAGAGATGCAGCCTTGTGTATCTAATGTCTTCCCAAATAGATTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCAGGAAACAAATAAAATATGCTAAGAAATCGTTGGACAATGGGATACCCTATTATGGAATTGATGCATGTAATGAGGTTTTGAATGGCTATAGCCATATTATTGGGCCTGCACTGAAACATGAATGCTTGTGTACTCGTGCTGCACTATTGGTCAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGGATAATTGATAATTCCTCTTACAAAGCACTATACTATATGTCAGAAGCATTGTCACAGTTGGGTAGACATGAAGATGCTTTGGAGTTTGCTGTTGCTTCCCATTCTTTGGCCCCATCCAAATCTGAAGTTGCAGAAAGAGTAGCGAATGTGAAGAGGGACATTGCTTTAGCTGAAGCTGAAAAAAATAGTCAGACCAATGATGGGGCATCAAGGTTTGATAGTAGGGGTGGAAGAATATTATCATTAAGCGACATACTCTATTGTCCTGAGTCTAATAGTGATGATCCACATGATGGTTCAAGATCAGAGAGGGATGATTCTGATTACGATGACGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGACATGATCTTGAATCAAATATTCTTCATGGAAATTTAAATCTTAGAATTCATGGGAGAGGTGACTCCAGAGACAATGCTGATGCAAGTGGCTCATGTGAATCACCTTCATCATCGTCACAGAACAGTAGAACTTCTTATCAGCCTGAACCAGCTGTTGATATGAAACAGAGATTTGTTGGCCACTGCAATATTGGGACTGACATAAAACAAGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCTAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGTGTACGGGCAGACTAATAAAAATGCTGAGTGGTGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATCTGGACTCCAACTGCTCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAGCAATCAACAAAAACTATCCCGTAGCCATAATTCTATCTTGCCCTTATTGGAATCATTTAGGAGGCAGGATTTTCCTGAAGGGTCGTTACGCTTGCATCCATTTGAATGTGCTCAAAGCTAA 2289 0.4155 MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNSKGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTGNIFCTKFIPETSDELVASGAGDAEVRLFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAFARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAKLDKCRKQIKYAKKSLDNGIPYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKWKNDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAERVANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERDDSDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDSRDNADASGSCESPSSSSQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTGRLIKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVLVAMESNQQKLSRSHNSILPLLESFRRQDFPEGSLRLHPFECAQS* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0797 762 SMART WD40_4 212 245 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 266 308 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 657 696 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 611 654 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 39 78 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 137 177 IPR001680 GO:0005515
Gso6g0797 762 SMART WD40_4 81 123 IPR001680 GO:0005515
Gso6g0797 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Gso6g0797 762 MobiDBLite consensus disorder prediction 587 608 - -
Gso6g0797 762 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 21 735 - -
Gso6g0797 762 SUPERFAMILY WD40 repeat-like 39 695 IPR036322 GO:0005515
Gso6g0797 762 MobiDBLite consensus disorder prediction 578 608 - -
Gso6g0797 762 SUPERFAMILY TPR-like 403 485 IPR011990 GO:0005515
Gso6g0797 762 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 21 735 IPR045151 -
Gso6g0797 762 Gene3D - 27 132 IPR015943 GO:0005515
Gso6g0797 762 Gene3D Tetratricopeptide repeat domain 384 501 IPR011990 GO:0005515
Gso6g0797 762 Gene3D - 573 700 IPR015943 GO:0005515
Gso6g0797 762 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Gso6g0797 762 Coils Coil 474 501 - -
Gso6g0797 762 MobiDBLite consensus disorder prediction 521 543 - -
Gso6g0797 762 Gene3D - 133 334 IPR015943 GO:0005515
Gso6g0797 762 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Gso6g0797 762 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Gso6g0797 762 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0797 Gso-Chr6 7524831 7540449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0797 37 131 Miscellaneous Gene Families AT5G08390 31.959 1.90e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0797 K11807 - gmx:100820036 1518.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0792 4 8154205 8175077 Gso6g0797 6 7524831 7540449 GST