Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0684 ATGGCTCCACCGCCTCCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTATTTGGCGAGATGGTAATGTGCTCCGCAACGTCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGGCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAACTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTATTGCTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGGCTCCAGCATGCAAACGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCGGGAAGTCCAGAACAATCGTATGCAGTTTTAAGCCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAAGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGATTGCTACTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATATAATGTATCAGTGGCAGAGAGTGTGGTCAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAAAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAATTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTGCAGATTCTGTTGTTCCAGCCCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCGCCTTCCTATAATGGTTCATCTGCTCCTACAACTTCACAACCACTTGCAGATTTGGCATTTCCAAGTACTGGCATATCTGGTCAAGCTCCTGCTTCTAGCTTGGCAATTGATGATCTGCTTGGTTTAGATTTTCCAGTTGAGACTGCAGCCATGCCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGCGCATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCTGAGGAATATTCTCTAAGTCCTCAAGGAGTCACATCGTTGACAACTCCTCATGCACTTCTTCGCCACATGCAAAGTCATTCAATACAATGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTTGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTAA 2538 0.4228 MAPPPPQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISTSTCIDADFPATLKHLLLNDPDTQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVSKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGIATDFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESADSVVPAQRVEANDKDLLLSTSEKDEGRDPGSNGSVYNAPSYNGSSAPTTSQPLADLAFPSTGISGQAPASSLAIDDLLGLDFPVETAAMPSPPPLNLNPKAVLDPGAFQQKWRQLPISLSEEYSLSPQGVTSLTTPHALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEAASMYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0684 845 SUPERFAMILY ARM repeat 29 600 IPR016024 -
Gso6g0684 845 Pfam Adaptin N terminal region 35 553 IPR002553 GO:0006886|GO:0016192|GO:0030117
Gso6g0684 845 MobiDBLite consensus disorder prediction 661 676 - -
Gso6g0684 845 MobiDBLite consensus disorder prediction 1 42 - -
Gso6g0684 845 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 17 843 IPR026739 GO:0016192
Gso6g0684 845 SMART B2_adapt_app_C_2 723 840 IPR015151 GO:0006886|GO:0016192|GO:0030131
Gso6g0684 845 MobiDBLite consensus disorder prediction 13 31 - -
Gso6g0684 845 MobiDBLite consensus disorder prediction 639 676 - -
Gso6g0684 845 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 17 843 - -
Gso6g0684 845 PIRSF Beta_adaptin 11 845 IPR016342 GO:0015031|GO:0030276
Gso6g0684 845 MobiDBLite consensus disorder prediction 643 657 - -
Gso6g0684 845 Gene3D - 15 611 IPR011989 -
Gso6g0684 845 Gene3D - 712 843 IPR012295 -
Gso6g0684 845 Pfam Beta2-adaptin appendage, C-terminal sub-domain 726 839 IPR015151 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0684 Gso-Chr6 6322750 6332907 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0684 - - gmx:100809730 1606.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0684 4 6679631 6688497 Gso6g0684 6 6322750 6332907 GST