Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0674 ATGGGAGTAAGAGAGTTAGAAAACCGTTTCGTCACCACCCTGAGAAACTGTCCGAAGATTGCAGAACTGAAGAAGATTCACGCACACATCGTGAAGCTGTCACTGTCGCAGAGCAACTTCCTGGTCACCAAAATGTTGGATCTATGCGATAACTTGAGTCACGTGGATTATGCGACCATGATATTCCAACAACTAGAAAACCCCAACGTGTTCTCTTACAACGCAATAATCAGAACCTACACCCATAATCACAAGCATCCTCTGGCAATTACTGTGTTCAATCAAATGCTGACAACGAAATCAGCATCGCCAGACAAATTCACGTTCCCGTTTGTGATAAAGTCCTGTGCGGGTCTTCTTTGTCGTCGTCTAGGGCAGCAAGTTCACGCGCACGTGTGCAAATTCGGACCCAAGACGCATGCAATAACGGAGAACGCGCTGATTGACATGTACACGAAATGTGGCGATATGAGTGGTGCGTACCAAGTGTATGAGGAAATGACTGAGCGAGACGCGGTTTCTTGGAATAGTTTAATCTCGGGGCACGTGAGGTTGGGGCAGATGAAGAGTGCGAGGGAAGTGTTTGATGAAATGCCTTGTAGGACTATTGTGTCTTGGACGACTATGATTAATGGGTATGCTAGAGGAGGGTGTTATGCTGATGCCTTGGGGATTTTTCGCGAGATGCAAGTGGTGGGTATTGAGCCTGATGAGATTAGTGTCATATCTGTTCTGCCGGCTTGTGCGCAGCTTGGGGCTCTGGAGGTTGGGAAGTGGATTCACAAGTACTCTGAGAAAAGTGGGTTTTTGAAGAATGCTGGTGTGTTTAATGCACTGGTTGAAATGTATGCTAAGTGTGGTTGCATTGATGAAGCGTGGGGTTTGTTTAATCAGATGATTGAGAAAGATGTGATTTCTTGGAGTACCATGATTGGGGGACTAGCTAATCATGGAAAAGGGTATGCGGCAATTCGAGTTTTTGAAGATATGCAGAAAGCAGGAGTGACTCCTAATGGAGTAACATTTGTTGGTGTTTTGTCAGCTTGTGCTCATGCAGGGTTGTGGAATGAGGGGTTGAGATATTTTGATGTTATGAGGGTGGATTATCATCTAGAGCCACAGATTGAGCATTATGGTTGCCTAGTTGATCTTCTAGGACGCTCGGGACAGGTTGAGCAGGCTCTGGACACAATATTGAAGATGCCGATGCAACCGGATTCAAGGACATGGAACTCTTTGTTGAGCTCTTGCAGGATTCATCACAATCTTGAGATTGCTGTTGTTGCTATGGAACAACTTTTAAAGCTTGAGCCTGAAGAATCTGGAAACTATGTTTTGCTTGCTAACATATATGCGAAACTTGACAAGTGGGAAGGTGTATCAAATGTTAGGAAACTAATAAGAAGCAAGAGGATAAAGAAAACCCCTGGGTGTAGCTTGATCGAGGTTAACAACTTGGTTCAAGAATTTGTATCGGGTGACGATTCAAAGCCCTTTTCACAAGAAGTGTTTTGGATCCTAAAAGGGCTGACATTACACCAAATTAGAACCAAAGACTTCATAGAATTTGTCGAAGATGCAGGCCAATTTTATAGTAAATTTATTTAG 1608 0.4397 MGVRELENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRTKDFIEFVEDAGQFYSKFI* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0674 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Gso6g0674 535 PANTHER OS05G0439300 PROTEIN 3 520 - -
Gso6g0674 535 Gene3D Tetratricopeptide repeat domain 8 124 IPR011990 GO:0005515
Gso6g0674 535 Gene3D Tetratricopeptide repeat domain 125 254 IPR011990 GO:0005515
Gso6g0674 535 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 520 - -
Gso6g0674 535 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Gso6g0674 535 TIGRFAM PPR: pentatricopeptide repeat domain 275 304 IPR002885 -
Gso6g0674 535 TIGRFAM PPR: pentatricopeptide repeat domain 145 171 IPR002885 -
Gso6g0674 535 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Gso6g0674 535 TIGRFAM PPR: pentatricopeptide repeat domain 204 238 IPR002885 -
Gso6g0674 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 170 IPR002885 -
Gso6g0674 535 Pfam E motif 420 482 IPR046848 -
Gso6g0674 535 Pfam PPR repeat family 68 117 IPR002885 -
Gso6g0674 535 Pfam PPR repeat family 202 249 IPR002885 -
Gso6g0674 535 Pfam PPR repeat family 302 350 IPR002885 -
Gso6g0674 535 SUPERFAMILY TPR-like 69 459 IPR011990 GO:0005515
Gso6g0674 535 Gene3D Tetratricopeptide repeat domain 369 509 IPR011990 GO:0005515
Gso6g0674 535 Gene3D Tetratricopeptide repeat domain 255 368 IPR011990 GO:0005515
Gso6g0674 535 Pfam PPR repeat 173 200 IPR002885 -
Gso6g0674 535 Pfam PPR repeat 377 401 IPR002885 -
Gso6g0674 535 Pfam PPR repeat 145 170 IPR002885 -
Gso6g0674 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Gso6g0674 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Gso6g0674 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0674 Gso-Chr6 6222111 6223760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0674 42 504 Glycoside Hydrolase AT3G49170 33.405 1.32e-88 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0674 - - gmx:100806006 1091.26