Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0483 ATGCTTGTCTTGGGAGTGTGGGATCTCAAATGGCTCCTCCAATTCGTATTCTCCGCGTTCGTCTTGGCGATTGGACTGCACGCGCTGCTCAAGAACACCGCCTCCAAGTACTTCGAGATTGAAGCCACTTTCCACGCTATGCCTGGCCCTCTCACCGACCATTCTCTCTGCGCCGTTTGTCGCAACCCCGCCAACAAGAAATGTTCGCGATGCAAATCCGTTCGATACTGTTCACAAGCATGTCAGCAGGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAGGGCAGCGCCAGTGTGATGAATTTGGATCAAACTGAAGTAACTAATCGTGTTTTCAAAGCTTCTGCTGCTGTGAATACAAGTACATCTTCAATTGCCCTCATTCCTGAATGCGGTCGCGGAACATCCAGGACTATCAAGCAGCCTAAAACTGTTATTTATCCGTATGATGAATTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGGCTCAAAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCACTTATTGCCTTTCTATTGGAGAAGGGTCATCACGGAGAATGCTGCCATAGCGATTGGTGCTTTCTGTGTGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTCAGGCATTTTCTCCAATGAATATTCTCTCTCGTTTGCCCAACATCAGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATAAGGTTTGCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCTCCTAAGCATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAATGTGAAAAGAATTCAAATCAATATGAAAATATGATGGACTTGAACGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAATTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTGAAGGCATGGAAACGTCTCACAGTGAAACGAGCTCCAAATATTCTCACAATTGCGTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGCCATTACATATGCTTCATCAAAGATTTATGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTGCTTTCCCAGGGTGCATACATGTTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATTGAATTGTCAGAGACAGCAGAAGTTCAAACAATCAAATCAAAGGTGCAGCCTGGCTGGACTGAACAAGCTGAATGCCTCTCAGATATGAAAAGCGAGACTTACAGTTACAGTAGAGGATATGAGGCTTTTCCATCTGACAGTAGTCCAGAGTTGAAGGTTTCTTGCTGTGAAAGCGTGACTGAAATGAACTCTGAAATTAAAAGAGAGCAGTCTAAGGATGTGGACATTATTGATGTTGCTAGTGAGTCTTTCTGTAATGGTTTTGAAACATCTCATATGCATGATTCTGAAGCTGTCAAAGATTTGGGGGATATAGATTCGGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAATGATAATGATATGGCTAAGTCCAGTCCTTGTCCACATTTGCCAAATGGCTTTTCTTGCTTTGATAAGGATTCTTCTGTTTCAGTGGATTATCAAAATACAAGGGAAGATTCAGGCCATAAAGATGTGACTAAATGCAAGTTAACATCAAATGGCTTTGCAAATTATAGCAATGGATATGGCAGTGCAAATAAATATGATGATGTCCCAGTGGAAGATGGTGATGGATCTTTTTCCACTGAAACACCCTCAGCTAAAATGCATCAATTGAAGGAGAGATTGGCTTCTGAAAATTCTGAAGTTGACAAAGGAAATGGAGTTAAGAAAGTGGAAATATCAGCGAATAAGTTAATAATTTAG 2205 0.4159 MLVLGVWDLKWLLQFVFSAFVLAIGLHALLKNTASKYFEIEATFHAMPGPLTDHSLCAVCRNPANKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQGSASVMNLDQTEVTNRVFKASAAVNTSTSSIALIPECGRGTSRTIKQPKTVIYPYDEFVKLFNWDKPGFPPCGLKNCGNSCFANVVLQCLSFTRPLIAFLLEKGHHGECCHSDWCFLCEFETHVEKVRLSSQAFSPMNILSRLPNISGTLGYGRQEDAHEFIRFAIDAMQSVCLDEFGGEKVVPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLNVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICFIKDLCGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIELSETAEVQTIKSKVQPGWTEQAECLSDMKSETYSYSRGYEAFPSDSSPELKVSCCESVTEMNSEIKREQSKDVDIIDVASESFCNGFETSHMHDSEAVKDLGDIDSDGSNTCSSVLEEISVCMEEQDDNDNDMAKSSPCPHLPNGFSCFDKDSSVSVDYQNTREDSGHKDVTKCKLTSNGFANYSNGYGSANKYDDVPVEDGDGSFSTETPSAKMHQLKERLASENSEVDKGNGVKKVEISANKLII* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0483 734 ProSiteProfiles Zinc finger MYND-type profile. 57 94 IPR002893 -
Gso6g0483 734 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 171 186 IPR018200 GO:0004843|GO:0006511
Gso6g0483 734 Gene3D Cysteine proteinases 166 483 - -
Gso6g0483 734 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 170 476 IPR028889 -
Gso6g0483 734 Pfam Ubiquitin carboxyl-terminal hydrolase 170 473 IPR001394 GO:0004843|GO:0016579
Gso6g0483 734 SUPERFAMILY Cysteine proteinases 166 485 IPR038765 -
Gso6g0483 734 Gene3D - 50 99 - -
Gso6g0483 734 CDD Peptidase_C19E 169 474 - -
Gso6g0483 734 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 18 672 - -
Gso6g0483 734 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 672 - -
Gso6g0483 734 Pfam MYND finger 57 94 IPR002893 -
Gso6g0483 734 SUPERFAMILY HIT/MYND zinc finger-like 53 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0483 Gso-Chr6 4435288 4441030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0483 8 481 Miscellaneous Gene Families AT4G31670 65.417 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0483 K11855 - gmx:100817913 1518.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0497 4 4761130 4766841 Gso6g0483 6 4435288 4441030 GST