Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso6g0478 | ATGATTTCCACCATGAGTTGGGATGAGAACAACGATGAATTTGAGATCCCTCTCACTCAAACGACAACGGCTTTTCACGCGGCTCTTGCTTCCATTGATGATGATAATAATCAACGGCCGTCGAAAAAACCTAAACGCAAAACGAGCGAGGGTGGTTGCGAAATTGATAACTGCTGCAGCTTGGATTTCATTCCTTCCACCATAGGTTGTGTTTCTGCTTGCAGTGTTCAACCGTTGGGAGAAGAGGACAGTGTTTCTCCTTCTTCTTCTACTGCGTCTTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAGCCAACGCGCTTAACCGTGCAGATGCAGACTCTGATTCGGAGCTTGATCTGTTGATGAATTTGTGCGATGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTGTGTGAGGTTGATATTTCGAACTTGACCGAGGAACAGCGGCATCTTCATACCAACAATTGTCTTGACGACGTTGCGGTGGTTCCTGATGATAACGAGAAAGGTGCTCAACAAGTGCCTAAAGTTGCTTCTGTGGTTGATTGGCTACGCGGGCTCGGCTTAAACAAGTATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATTGCTGCACTTGGGCCGAGAAGAAAGATTGTGCATGCCCTGAGTGAACTTAGAAAAGGAGATGCTGCTGCAAATGAGAAACATGAGGATTCTTCGGCGGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAGTCTGAAAGAAAAGTTGATGGCACTGGTAAACCAGTGGCAAACAAATTAATCACTGAATATTTTCCGGGATTTGCTTCCAAAGAAAAGAAAGTTTCTGCCTCTCCCGGAGAACCACAGGAAAAGAAAAACAGTGGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATACGCCAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTGCCGTCCAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCAGTTACAGCTAGACTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCAAATGGTAAGGCGGTGCTTCACACGGGTGATTTCCGCTTTAGTGAAGAAATGGCTGTCAATCCTTTAATGCGAATATGTCCTATCAATACTCTGATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGTCTGTAATACAATTCGTTATTGATGCTGTTCAAGCAGAAACTTTTAATCCCAAGACCCTTTTTCTGATCGGCAGCTATACAATTGGCAAAGAAAGATTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTCACGTTACTGCTGCGAAGTTGCGTATTTTAAAATGTTTGGAATTGAAGGAGGAGGATATGCAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTGGCGAGCTTCAAAAGATTGAAGCACATATCAAGTCAATATAAGAGTCAGTACAATCTTATAGTTGCTTTCTCTCCCACTGGTTGGACGTTTGGCAAAGGTAAAAAGAAGTCAACGGGAAGGAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTTGTAAGAGTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCAGAATCTTCTGATGCAATGATTTCTCTGTTGTTATCTTGA | 2049 | 0.428 | MISTMSWDENNDEFEIPLTQTTTAFHAALASIDDDNNQRPSKKPKRKTSEGGCEIDNCCSLDFIPSTIGCVSACSVQPLGEEDSVSPSSSTASLSELKTKGNYLRNSIESKLVVSRANALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDDVAVVPDDNEKGAQQVPKVASVVDWLRGLGLNKYEDVFVREEVDWDTLQWLTEEDLLSMGIAALGPRRKIVHALSELRKGDAAANEKHEDSSAEPRRIRNQKVKLKHDKSERKVDGTGKPVANKLITEYFPGFASKEKKVSASPGEPQEKKNSGLDSGRKHKSKNTPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMAVNPLMRICPINTLILDTTYCNPQYDFPKQESVIQFVIDAVQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRILKCLELKEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYKSQYNLIVAFSPTGWTFGKGKKKSTGRRWQQGTIIRYEVPYSEHSSFTELKEFVRVVSPDNIIPSVNNDGPESSDAMISLLLS* | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso6g0478 | 682 | MobiDBLite | consensus disorder prediction | 36 | 52 | - | - | |
| Gso6g0478 | 682 | MobiDBLite | consensus disorder prediction | 326 | 345 | - | - | |
| Gso6g0478 | 682 | Pfam | DNA repair metallo-beta-lactamase | 564 | 668 | IPR011084 | - | |
| Gso6g0478 | 682 | CDD | SAM_superfamily | 195 | 250 | - | - | |
| Gso6g0478 | 682 | MobiDBLite | consensus disorder prediction | 30 | 52 | - | - | |
| Gso6g0478 | 682 | CDD | SNM1A-1C-like_MBL-fold | 336 | 493 | - | - | |
| Gso6g0478 | 682 | SMART | Lactamase_B_5a | 220 | 495 | IPR001279 | - | |
| Gso6g0478 | 682 | SUPERFAMILY | Metallo-hydrolase/oxidoreductase | 360 | 664 | IPR036866 | - | |
| Gso6g0478 | 682 | Pfam | SAM domain (Sterile alpha motif) | 192 | 252 | IPR001660 | GO:0005515 | |
| Gso6g0478 | 682 | SMART | SAM_4 | 188 | 254 | IPR001660 | GO:0005515 | |
| Gso6g0478 | 682 | MobiDBLite | consensus disorder prediction | 311 | 345 | - | - | |
| Gso6g0478 | 682 | Gene3D | - | 496 | 643 | - | - | |
| Gso6g0478 | 682 | Gene3D | - | 356 | 665 | IPR036866 | - | |
| Gso6g0478 | 682 | PANTHER | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | 148 | 678 | - | - | |
| Gso6g0478 | 682 | SUPERFAMILY | SAM/Pointed domain | 192 | 253 | IPR013761 | - | |
| Gso6g0478 | 682 | PANTHER | DNA CROSS-LINK REPAIR 1A PROTEIN | 148 | 678 | - | - | |
| Gso6g0478 | 682 | Gene3D | - | 187 | 265 | IPR013761 | - | |
| Gso6g0478 | 682 | MobiDBLite | consensus disorder prediction | 253 | 292 | - | - | |
| Gso6g0478 | 682 | ProSiteProfiles | SAM domain profile. | 191 | 254 | IPR001660 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso6g0478 | Gso-Chr6 | 4369975 | 4375960 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso6g0478 | 194 | 248 | Glycosyltransferase | AT3G07170 | 49.091 | 2.34e-07 | 49.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso6g0478 | K15340 | - | gmx:100816321 | 1368.99 |