Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0443 ATGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGTTCAAGCTCAAGGGTGCGGATAGGTCAGCGTACTTCGCACGCAGAGAGGCAGCCAAGGTCTTGAAAGTGGTTCTCGAAGGAGACGCTAAGCGCCGCGCTCTTGCCTCCATCAAATCCCTCATCTATCAACCTTCCGTTAGAAACAAGAAAGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAATTATGTCTTGGAAGCTGCTTCTATTCTCAACAGCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATTCTTTTCGGCCAGGCGGTTCCACTAGTTGGTGATGCAGAGAAGTTCCTTATGCGCCACCAAGATGCCCTGCGTTCTACTCTCAAACAGCTTTTGTTGCAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATGTTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGACGTCGATTCTGCCTTGCTTGAACTTCAGAAAAACTACTCGGTTCAAAAGGATCATTTACTGCCTGACTTGCTGATACTCCCACCAGGAACTGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTTTGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGTGCAGCACCGGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATAGCATGTGAGCTGCAAAGAGAAAGGATTAAGCGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCAAAATCCCAAGGATCCTTCATATTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGACCATCTGCTCCCATCTAAAGCAGCAGGTCAGGATACTGATACAGAAAGATTGAACAAGCTCGCAACTTTCCAGAGAAAGGCTCTTCAACATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTATATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAATTGGCAAAACCCTTCCCCGAGTGGCAATGCCGTGGTCTACCAGTGTTTGAAGGCTCTGAATGCCTGGTTCGGACAGATCCTGCTAAACACGGCGAGGGTTTCTTCATCGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGGGCTCAAATAAAAATGAAACTAGAATTTCCCACAGCACTCCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGCGTACCGTTTGTTAGCACTAACCTATTCAAAATGTGGTTATATGATAGTACAATTGTTAAGTCTTGGCGGTCGAATTGA 1476 0.4363 MKKSGEENGGKFKLKGADRSAYFARREAAKVLKVVLEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIINYVLEAASILNSKWKRQRELIYIIVYDILFGQAVPLVGDAEKFLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDVSVPRYVRVNTLKLDVDSALLELQKNYSVQKDHLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQRERIKRLKDTIKLSGASNIQVLNDDFLNQNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDTDTERLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFPEWQCRGLPVFEGSECLVRTDPAKHGEGFFIALFTRKDANFSGGSNKNETRISHSTPEIKNARRKKKRVPFVSTNLFKMWLYDSTIVKSWRSN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0443 491 PRINTS RNA (C5-cytosine) methyltransferase signature 207 221 IPR023267 GO:0001510
Gso6g0443 491 PRINTS RNA (C5-cytosine) methyltransferase signature 236 246 IPR023267 GO:0001510
Gso6g0443 491 PRINTS RNA (C5-cytosine) methyltransferase signature 305 317 IPR023267 GO:0001510
Gso6g0443 491 PRINTS RNA (C5-cytosine) methyltransferase signature 361 377 IPR023267 GO:0001510
Gso6g0443 491 PRINTS RNA (C5-cytosine) methyltransferase signature 417 434 IPR023267 GO:0001510
Gso6g0443 491 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 159 435 IPR029063 -
Gso6g0443 491 Gene3D Vaccinia Virus protein VP39 216 441 IPR029063 -
Gso6g0443 491 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 150 435 IPR001678 GO:0008168
Gso6g0443 491 PANTHER BNAA09G04380D PROTEIN 17 447 - -
Gso6g0443 491 CDD AdoMet_MTases 235 323 - -
Gso6g0443 491 Pfam 16S rRNA methyltransferase RsmB/F 226 432 IPR001678 GO:0008168
Gso6g0443 491 Gene3D Sun protein; domain 3 151 215 - -
Gso6g0443 491 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 17 447 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0443 Gso-Chr6 4111523 4116282 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0443 K15264 - gmx:100811850 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0465 4 4397418 4402839 Gso6g0443 6 4111523 4116282 GST