Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0415 ATGGCGGAGGAAGCACAGTACTCATCGGGACCCGATTCCGCGCCCCTCAAGCGCAAGTACGAAGACCAACCCTCCGGCATCGAGCTTGCCAAGCAGCGTGCTCAGGAAGTCGCCGCACGCCTCCTCAACGCCGCTCCTCCTCCGCCACTCGACGCCAAGCGTCCCAAACCCGACACCGGCTTCGATTCTCTCGATTTGAAGCCTCTGTATTCCGCATCTCCTCCTCCCGTCTCCTACGGTCACCAAGGTTCCAGCAAGAAGATTGATATCCCTAATGGCAGGGTTGGTGTGATTATTGGTAAAGGCGGAGAGACTATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAATTACTCGTGATATTGATGCGGACCCTAATTCTTCCACTAGGACGGTTGAGCTTATGGGCACTCCTGAAGCAATTTCCTCTGCCGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCATTGTTACTCGAAGATTCACGGGACAAGCTGGGTCGGATGAATTTGTCATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGCAAAGGTGGAGAAACTATAAAGAATATGCAAGCTTCTACTGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCCCCGGGTGACACATCAACTGAAAGAACATTAAAAATTGATGGTACTCCTGAGCAAATTGAGTCTGCAAAGCAGTTGGTTTATCAAGTCATCAGTGGCGAGAATCGTGTTAGAAATCCAGCAATGTCTGGTGGTTATCCTCAACAAGGTTACCAATCTCGACCACCATCTAACTGGGCTCCCCCTGCTCCAACGCAGCAACCTGGTTATGGCTACGTGCAACCTGGAGCATACTCTGGTCCATCACCCCAGTATAACATGCCTCAGCAACCATATGCAGGCTATCCTCCCCAGCAACCTGATGGATATTCCACCAATTGGGATCAGTCTACTGCACCACCTCACCAACAGTCTACTCATGGTGGTGGTTATTATTACTATAGTCAACAGCCACAGCAACCACAAAATCCTGGGGGTCCTGCCCCTCCAGCTGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAACCAATCAGCACAGCAGGGTTATGCACAGGACAGCTATAATGCATATAATGCGCAATCACAATCAGGGTATGGGCAGCCACCTACATATGATCAGCAGCAAGGCTATGGTAGTGAAAGCAACCCGGCACAAGAGGGCCACACTGCAAACTATGCAGTACAGGGAGATTCAGCCCAAGCTCCTTCTGCCCAACCAATTACCGTAGCGCAGCAAGGTTATCCTACCAACCAACTGCCCAGTTCAAACACTGCCAACTACCCACCTCAAGGAACTCCTCAGCCAGGTTATGGGGTTCCCCCTACATCCCAAGCAGCTTATGGCAATCAATCACAGCCTGGTTATGGTGGTGCAGTGCAACCAGGGTACGGTCCTCAAACATATGGTGCTCCGCAGGGTGGCCAGCCTGGTTATGGTCAGGCGCTGCCTTCATACAGCAACAGTTCTTATGGTGCTGGTTATACACAGACTCCGGCGTATACCGGTGATGGTAATGGGAATGCTCAGGCACCCCAGAGTGCCATTGCTAAAGCATCCCCTTGA 1665 0.5069 MAEEAQYSSGPDSAPLKRKYEDQPSGIELAKQRAQEVAARLLNAAPPPPLDAKRPKPDTGFDSLDLKPLYSASPPPVSYGHQGSSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQITRDIDADPNSSTRTVELMGTPEAISSAEKLINEVLAEAESGGSGIVTRRFTGQAGSDEFVMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLVYQVISGENRVRNPAMSGGYPQQGYQSRPPSNWAPPAPTQQPGYGYVQPGAYSGPSPQYNMPQQPYAGYPPQQPDGYSTNWDQSTAPPHQQSTHGGGYYYYSQQPQQPQNPGGPAPPADGSAYNYSQPPSSGYNQSAQQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSESNPAQEGHTANYAVQGDSAQAPSAQPITVAQQGYPTNQLPSSNTANYPPQGTPQPGYGVPPTSQAAYGNQSQPGYGGAVQPGYGPQTYGAPQGGQPGYGQALPSYSNSSYGAGYTQTPAYTGDGNGNAQAPQSAIAKASP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0415 554 Gene3D K Homology domain, type 1 78 170 IPR036612 GO:0003723
Gso6g0415 554 Gene3D K Homology domain, type 1 171 273 IPR036612 GO:0003723
Gso6g0415 554 CDD KH-I 177 243 - -
Gso6g0415 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 79 160 IPR036612 GO:0003723
Gso6g0415 554 MobiDBLite consensus disorder prediction 41 85 - -
Gso6g0415 554 MobiDBLite consensus disorder prediction 513 554 - -
Gso6g0415 554 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 46 515 - -
Gso6g0415 554 MobiDBLite consensus disorder prediction 365 490 - -
Gso6g0415 554 MobiDBLite consensus disorder prediction 255 554 - -
Gso6g0415 554 Pfam KH domain 179 244 IPR004088 GO:0003723
Gso6g0415 554 Pfam KH domain 87 152 IPR004088 GO:0003723
Gso6g0415 554 CDD KH-I 85 150 - -
Gso6g0415 554 MobiDBLite consensus disorder prediction 315 350 - -
Gso6g0415 554 MobiDBLite consensus disorder prediction 1 27 - -
Gso6g0415 554 ProSiteProfiles Type-1 KH domain profile. 175 243 - -
Gso6g0415 554 ProSiteProfiles Type-1 KH domain profile. 83 150 - -
Gso6g0415 554 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 46 515 - -
Gso6g0415 554 SMART kh_6 82 155 IPR004087 GO:0003676
Gso6g0415 554 SMART kh_6 174 248 IPR004087 GO:0003676
Gso6g0415 554 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 250 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0415 Gso-Chr6 3863146 3867901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0415 K13210 - gmx:100797476 1009.98