Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0403 ATGAACATGCTGTCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGGTGGCAAGAGTACGAGAAGAATCCTTACCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATTCTGACATAGTAGGGATGAAGAAAGATGGAATATCCGTCTTTAGAGAGCTTGCTCTATTTCAAGATTACCATGGGTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGAAAATGGCATCAAATTTGCTTCGGAGAAGCTCGTTCTCACTGCCGGCGCAACTCCCGCGAATGAGATTCTGATGTTTTGCCTTGCTGATCCTGGGGAAGCTTTCATTCTTCCCACACCCTATTACCCTGGGTTTGATAGAGATCTGAAATGGAGAACCGGGGTTGAGATTGTTCCAATGCATTGCTCCAGCTCAAATGGCTTTAGAATCACTTCCTCTGCTTTAGAACAAGCCTACCAACAAGCACAAAAACTGAATCTCAAAATCAAAGGGGTTTTAGTAACCAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAGCTCAACCACCTAGTAGATTTCGCAATTGACAAAAACATTCACATAATAAGCGACGAAATCTACTCGGGTACTGTCTTCGACTCACCCAAATTCGTAAGCATCACAGAAGTTGTGAACGAGAGAATTACTACTGTCAACAACAATAGCATTACCAGCATTTGGAACCGCATTCACATTGTTTATGGTTTCTCCAAAGACCTTGGCATACCAGGATTTCGTGTGGGAATGATTTTCTCCAACAACGAAACTGTTGTGGCTGCTGCCACCAAAATGTCAAGCTTCGGATTGGTGTCTTCACAAACTCAGTATTTGGTGGCAAACTTGCTTAAGGACAAGAAATTCACTTGCAAGCACATGGAAGAGACTCAGAAGAGACTGAAGAGGCGAAAGGAGATGCTTGTGTCTGGCCTCAGAAACGCGGGGATTAGGTGTTTGAAAAGCAATGCTGGGTTGTTCTGTTGGGTTGACATGAGACACTTATTGGGCTCTGCCACTACTTTTGAGGCAGAGAAGGAGCTTTGGATGAACATTCTTTGCAAAGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTGTGAACCAGGTTGGTTCAGGGTATGCTTTGCCAACATGTCTGAAGACACGTTAGAAGTTGCAATGCGGCGCATAAAGGCTTTTGCGGACTCAATTACCATCTCTACTAGTGTCGTAAGAGGATCCATTGCTAAGTGGGAAAATTAA 1362 0.4369 MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQLSFDLLKSWLRRNSDIVGMKKDGISVFRELALFQDYHGLPALKNELVDFMAKIRENGIKFASEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALEQAYQQAQKLNLKIKGVLVTNPSNPLGITMTKTELNHLVDFAIDKNIHIISDEIYSGTVFDSPKFVSITEVVNERITTVNNNSITSIWNRIHIVYGFSKDLGIPGFRVGMIFSNNETVVAAATKMSSFGLVSSQTQYLVANLLKDKKFTCKHMEETQKRLKRRKEMLVSGLRNAGIRCLKSNAGLFCWVDMRHLLGSATTFEAEKELWMNILCKVGLNISPGSSCHCCEPGWFRVCFANMSEDTLEVAMRRIKAFADSITISTSVVRGSIAKWEN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 43 69 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 76 92 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 113 133 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 135 156 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 189 213 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Gso6g0403 453 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Gso6g0403 453 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Gso6g0403 453 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 11 3 441 - -
Gso6g0403 453 SUPERFAMILY PLP-dependent transferases 4 434 IPR015424 -
Gso6g0403 453 Gene3D - 63 323 IPR015421 GO:0003824
Gso6g0403 453 CDD AAT_like 77 432 - -
Gso6g0403 453 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 441 - -
Gso6g0403 453 Gene3D Aspartate Aminotransferase, domain 1 29 429 IPR015422 GO:0003824
Gso6g0403 453 Pfam Aminotransferase class I and II 41 430 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0403 Gso-Chr6 3750912 3756589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0403 K01762 - gmx:100803507 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0421 4 3935702 3941657 Gso6g0403 6 3750912 3756589 GST