Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0353 ATGATCTCAATCACTTCTACTGAATTGAACTACTTAGTCTTCCGTTACCTCCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCTGGGATTGATAAAAGCAAAAATGATGATAGTGTGGTTCCACCGGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTAGTGATGCTGACATGGATGAGGATTTTTCATTTCTACAACCTCTGGATCTTATCACAAAGGGCCCAAGTGAACTACACAATATAGTGAAAGCCAGAAAGGAAAATCTACGTCAGCATAAATTTGAATCAAATAAAATAATAAATGACTTGAGTCAGGATGACCCAAGGAGGGAGGAAACTGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACACATTGGAAAAAATTAGGTTAGAGAAAGATAAGGAGCCGCCAAAGCCTGAGTATAAAGAAATACAGCACACCGATCAAAACCATACAGAGAAACCTGAAGATAAGATTACTGTCGAAAATCTAGAAAATAGAGCACAAGGAGGGGCTGAGCCAATGGAGATCTCCCAGAGCCCCATGTCGTCGCCTGATGATACTCCATGTGGTTATGTAAAACTTTTGAAAGGTCATACATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGAGCTTGTGACTCTAGTGTGCAAAATGAACCAGTAAATGTTGTGGTGCTGCAGCACTTCAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATTGTACACTAAACAAGCACAGAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTATGGAATATAAAGACTGTGGAATGGAAACAACTATTTGAATTTCACACCGGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGACCCATCAGGTTCTTTGCTGGCTTCCTGCTCCGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCAGCAGCTAGTACTAGCAAGTGCCTCATTCGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAATGTACTCTACAGCTTAAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGGGAGTACCTGGCCAGTGGCTCCATGGATAGATACCTGCATATATGGTCCGTGAAGGAGGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTTCGGATGTAA 1698 0.4122 MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDKSKNDDSVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKGPSELHNIVKARKENLRQHKFESNKIINDLSQDDPRREETEKERKEKENEHTLEKIRLEKDKEPPKPEYKEIQHTDQNHTEKPEDKITVENLENRAQGGAEPMEISQSPMSSPDDTPCGYVKLLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGACDSSVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNCTLNKHRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTVEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPSGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGNVLYSLNGHRDPVYSVAFSPNGEYLASGSMDRYLHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0353 565 CDD WD40 213 521 - -
Gso6g0353 565 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Gso6g0353 565 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Gso6g0353 565 PRINTS G protein beta WD-40 repeat signature 508 522 IPR020472 -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 488 IPR001680 GO:0005515
Gso6g0353 565 SMART Lish 5 37 IPR006594 GO:0005515
Gso6g0353 565 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Gso6g0353 565 MobiDBLite consensus disorder prediction 109 178 - -
Gso6g0353 565 Gene3D - 2 90 - -
Gso6g0353 565 ProSitePatterns Trp-Asp (WD) repeats signature. 466 480 IPR019775 -
Gso6g0353 565 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 246 - -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 526 - -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 430 - -
Gso6g0353 565 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 565 - -
Gso6g0353 565 PANTHER WD40 REPEAT PROTEIN 4 565 IPR045183 GO:0003714|GO:0016575
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Gso6g0353 565 Coils Coil 126 151 - -
Gso6g0353 565 Pfam WD domain, G-beta repeat 276 304 IPR001680 GO:0005515
Gso6g0353 565 Pfam WD domain, G-beta repeat 483 521 IPR001680 GO:0005515
Gso6g0353 565 Pfam WD domain, G-beta repeat 211 245 IPR001680 GO:0005515
Gso6g0353 565 Pfam WD domain, G-beta repeat 434 479 IPR001680 GO:0005515
Gso6g0353 565 Pfam WD domain, G-beta repeat 391 428 IPR001680 GO:0005515
Gso6g0353 565 Pfam WD domain, G-beta repeat 311 345 IPR001680 GO:0005515
Gso6g0353 565 SUPERFAMILY WD40 repeat-like 208 563 IPR036322 GO:0005515
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 437 IPR001680 GO:0005515
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 348 IPR001680 GO:0005515
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 530 IPR001680 GO:0005515
Gso6g0353 565 Gene3D - 203 565 IPR015943 GO:0005515
Gso6g0353 565 SMART WD40_4 348 386 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 524 562 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 306 345 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 431 479 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 261 304 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 389 428 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 482 521 IPR001680 GO:0005515
Gso6g0353 565 SMART WD40_4 206 245 IPR001680 GO:0005515
Gso6g0353 565 Pfam LisH 8 33 IPR006594 GO:0005515
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 348 - -
Gso6g0353 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0353 Gso-Chr6 3327970 3334465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0353 393 563 Miscellaneous Gene Families AT5G08390 32.370 2.98e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0353 K04508 - gmx:100792917 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0376 4 3452293 3458666 Gso6g0353 6 3327970 3334465 GST