Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0082 ATGACTGACATCATGTCCGCACCTGTTGACCCACCCATGAAACTTGGTCATGAAATTGAATATTCCGAGGATGAAAGGAAGAAAAAGCTTGGATCGTTCAAGAAGGTGGCAATCAGCGCCTCATCTAAGTTCAAGCATTCCTTTGCTAAGAGGGGGAGGAAGCACAGCAGGGTTATGTCTCTTTCTATCGAGGATGATCTTGATGCAGAAGAGTTGCAAGCAGTTGATGCTTTTCGCCAAGCACTCATCTTGGAAGAGCTATTGCCCTCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGGGCCAGGTTGACTCTACCAAGCTGATGCAAGTAACAACAATGGAACGCTATCTCAAGTACCATGTAAAAGAGTTTGAAAGGACCTTCGCTGTTAAGTTGCCTGCATGTTCCATCGCGGCAAAGAAGCACATTGACCAAAGCACAACTATTTTGGATGTTCAAGGAGTGGGTCTTAAAAGTTTGAACAAAGCTGCAAGGGATCTCCTCCAGAGGCTTCAGAAAATTGACGGTGACAACTACCCTGAGTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGTCCATGGAATGACCCAGATATCTTGAAGATGGTTCACAATGGCGAGGGCAAATGCAAGAGAAAAACCTTATCTGGGATTGAGGAGAAAAGAATCATAGAAGATGGTACTGCAAATCAAAATCTAGGAAACAAAGAATCATTTCCAGAGAGATACGATGTTGATGTACAATGTTTATCTCCAAAAAAGCAATGTACTGTGTATAAATATGACGCATTTGTCCCTGTGCTTGGCAAGCCAGTCGATTCATCTTGGAATACATTAACACAGAAAGATAAAGATGCTCTTTCTAAAGATTGTTTTCCTAGCAAGACTTGTGATGGGTATAGCAATCACTTTGTTGGAGGAATCATGGCCATTGTTATGGGAATTGTAACAATGATCCGCATGACAAGGAACATGCCAAGGAAAATCACAGAAGCAGCACTGTATGGCAGCTCAGGGTATTATGATGGCACTATGATGAAAGCAGCCACCTTTTCATGCAATGATTACATGGCCATGATGAAGCGCATGGCTGAACTAGAAGAGAAAGTCACTATCCTTAGCATGAAACCTGTCATTCCACCCGAAAAGGAGGAAGTGCTGAATAATGCTCTAGGCAGAGTCACCACTATCGAACAAGACTTGGTTGCAACAAAAAAGGCACTTGATGATGCCCTTGCTCGACAAGTAGAACTCCAAGCTCAAATTGACAAGAAGAAGAAAAAGAAGAACAAGTTGTTCCGCTTCCGCTGTTTTGCTGCGTGA 1716 0.4242 MTDIMSAPVDPPMKLGHEIEYSEDERKKKLGSFKKVAISASSKFKHSFAKRGRKHSRVMSLSIEDDLDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIEKTKQMWTDMLKWRQEFGADTIMEDFEFNELEEVLKYYPQGHHGIDKDGRPVYIEKLGQVDSTKLMQVTTMERYLKYHVKEFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPDILKMVHNGEGKCKRKTLSGIEEKRIIEDGTANQNLGNKESFPERYDVDVQCLSPKKQCTVYKYDAFVPVLGKPVDSSWNTLTQKDKDALSKDCFPSKTCDGYSNHFVGGIMAIVMGIVTMIRMTRNMPRKITEAALYGSSGYYDGTMMKAATFSCNDYMAMMKRMAELEEKVTILSMKPVIPPEKEEVLNNALGRVTTIEQDLVATKKALDDALARQVELQAQIDKKKKKKNKLFRFRCFAA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0082 571 SUPERFAMILY CRAL/TRIO domain 139 334 IPR036865 -
Gso6g0082 571 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Gso6g0082 571 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Gso6g0082 571 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Gso6g0082 571 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Gso6g0082 571 SMART sec14_4 139 310 IPR001251 -
Gso6g0082 571 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Gso6g0082 571 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 563 - -
Gso6g0082 571 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 563 - -
Gso6g0082 571 Gene3D - 39 126 - -
Gso6g0082 571 Pfam CRAL/TRIO, N-terminal domain 69 118 IPR011074 -
Gso6g0082 571 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Gso6g0082 571 SUPERFAMILY CRAL/TRIO N-terminal domain 65 135 IPR036273 -
Gso6g0082 571 Coils Coil 224 244 - -
Gso6g0082 571 Gene3D - 127 338 IPR036865 -
Gso6g0082 571 CDD SEC14 140 308 IPR001251 -
Gso6g0082 571 Coils Coil 539 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0082 Gso-Chr6 831769 836148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0082 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 28.631 1.51e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0082 - - gmx:100798374 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0091 4 843476 848057 Gso6g0082 6 831769 836148 GST