Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0034 ATGGGTTTCTTTGGCACCATATTTGGTTTTTTTGGCTTTGGAATTGGGATTTCTATTGGTTTCGTTATTGGCTATTTTCTCTTTATATATGTTCAACCCACTGATGTTAAGGATCCTGAAATTCAACCATTGGCGGAGGAAGACTCGGAAACTTTACAGAGAATGATTCCTGAGATACCACTTTGGATAAAAAATCCAGACTTTGATCGGGTTGATTGGCTTAACAAGCTTATCGAATATATGTGGCCATACCTTGATAAGGCAATATGCAAAACTGCAAAGAATATTGCAAAACCAATAATTGACGAGCAAATACCGAAATATAAGATTGATTCTGTTGAGTTTGAAGAGTTCACACTAGGATCTTTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGAGACTGATGAAAAAGAGTTAATTATGGAGCCTTCTATAAAATGGGCGGGAAATCCTAATGTTATTGTTGCTGTTAAGAAATTTGGGCTGAAAGCAATCATTCAGGTGATGGATTTGCAAGCTTTTCTTGCACCTCGTATTACTTTGAAACCTTTGGTTCCAAGTTTTCCATGTTTTGCAAATATCTATGTGTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGGTTGATCTTATGTCTATTCCTGGCTTCTACAAGTTTGTTCAGGAGTTTATTAAAGATCAAGTTGCAAATATGTATTTATGGCCTAAAACCTTGGAAGTTCAAGTTATAGACCCAACAAAAGCCTTGAAGAGGCCGGTTGGAATTTTAAATGCAAAGATTTTAAAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAACTTGACCGAGGATAAGTTGACGTCAAAAAAGACTACTGTGAAGCATAAAAACTTGAATCCTGAATGGAATGAGGAGTTTAGTTTGGTTGTTAAAGATCCTGAGTCTCAAGCTTTAGAGCTTTATGTCTATGATTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATATGGTTCCTTTGAAAGAACTTTTGCCTGAAGAGCCTAAAGTTTTTACTCTTGACCTCCTAAAAAACATGGATCCTAATGATGCCCAAAATGAGAAGTCTCGTGGACAAATTGTTTTGGAATTGACGTATAAACCTTTTAGAGAGGAAGACTTAGCAGGTTTTGATGAAACACAACCAATACAAAAAGCTCCTGAAGGCACTCCACCTGGTGGTGGTCTACTTGTAGTCATAATCCATGAAGCTCAAGACATAGAGGGAAAGTACCATACTAATCCACATGTACGTCTTATTTTTAGGGGAGAGGAAAAAAGGACTAAGGTCATGAAGAAGAACAGAGATCCAAGGTGGGAAGAAGAGTTCCAATTTCTGGTGGAAGAGCCCCCCACTAATGACAAATTACATGTAGAGGTTGTTAGCACTTCATCACGAAACCTTCTACGTCAAAAGGAATCATTGGGCTATGCTGACATCAGTCTTGCAGATGTTGTTGCCAACAATAGAATTAATGAGAGACACCATCTTATTGACTCCAAGAATGGTCGCATTCAAATAGAGCTACAATGGAGAGCTTCATAA 1611 0.3818 MGFFGTIFGFFGFGIGISIGFVIGYFLFIYVQPTDVKDPEIQPLAEEDSETLQRMIPEIPLWIKNPDFDRVDWLNKLIEYMWPYLDKAICKTAKNIAKPIIDEQIPKYKIDSVEFEEFTLGSLPPTFQGMKVYETDEKELIMEPSIKWAGNPNVIVAVKKFGLKAIIQVMDLQAFLAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLVGVDLMSIPGFYKFVQEFIKDQVANMYLWPKTLEVQVIDPTKALKRPVGILNAKILKAMKLKKKDLLGASDPYVKLNLTEDKLTSKKTTVKHKNLNPEWNEEFSLVVKDPESQALELYVYDWEQVGKHDKMGMNMVPLKELLPEEPKVFTLDLLKNMDPNDAQNEKSRGQIVLELTYKPFREEDLAGFDETQPIQKAPEGTPPGGGLLVVIIHEAQDIEGKYHTNPHVRLIFRGEEKRTKVMKKNRDPRWEEEFQFLVEEPPTNDKLHVEVVSTSSRNLLRQKESLGYADISLADVVANNRINERHHLIDSKNGRIQIELQWRAS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0034 536 SMART C2_3c 418 516 IPR000008 -
Gso6g0034 536 SMART C2_3c 261 361 IPR000008 -
Gso6g0034 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 534 IPR035892 -
Gso6g0034 536 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 535 - -
Gso6g0034 536 CDD C2 262 364 - -
Gso6g0034 536 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Gso6g0034 536 ProSiteProfiles C2 domain profile. 400 517 IPR000008 -
Gso6g0034 536 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gso6g0034 536 CDD C2 419 520 - -
Gso6g0034 536 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 535 IPR045050 GO:0008289
Gso6g0034 536 PRINTS C2 domain signature 277 289 IPR000008 -
Gso6g0034 536 PRINTS C2 domain signature 304 317 IPR000008 -
Gso6g0034 536 PRINTS C2 domain signature 326 334 IPR000008 -
Gso6g0034 536 Gene3D C2 domain 256 409 IPR035892 -
Gso6g0034 536 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Gso6g0034 536 Pfam C2 domain 418 516 IPR000008 -
Gso6g0034 536 Pfam C2 domain 260 358 IPR000008 -
Gso6g0034 536 Gene3D C2 domain 418 535 IPR035892 -
Gso6g0034 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0034 Gso-Chr6 339409 346052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0034 255 507 Lipid Metabolism Gene Families AT3G61300 28.044 4.90e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0034 - - gmx:100780850 1036.94