Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0014 ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGACACTTTCAGGACTCATCCCTATGCTCTTCCTACCCATCCATCAAAAACAAGACTAAATTTGTGTTTCCAGCCGCAATGTGTGTTGTCTGCCACATCTCCTTCAACGCTGCTTAGTTTGGAAAAGAAGTTGGCTTTAGATGCTCCTTCTGATCCAAACACGTCTTGGCCCTATATCGCTGCTGTTGCCCCTCCCTCACCACACTTAAAGGCCAACTTTAAATCAACCTTATCTGCGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCATCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGTTTTACTAGTAAAAAAGAAGCCTCCAGCAGAAGCAGAGTATAAATCCCATGTTTCTTCCAAATCTGATGATTTACTTCTCAAATGGTTTCATCAAATGGAAGCGGAAGATGGTGTAGCAGAAGAGTCCATGGGTGCTGGAGCAGAAATAATGGAAGGTGTTGACATAAGCCCCAGCGAAGAGGAATCTGATCTAGAGCCTTCCCATGAGGAACTTGAGTGTCTGCAGGAACGGCTTTCAGACAATATAGCTGTAAGATCTAGGCGCCTAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTACCACGAATTTTGCATCTTTAAAACCTGGCTCCTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACGACTAGCGCTTCTAGGCTTCTTACTCCAACTGAAGAAATTAAGTTGTCAGCAGGAATACAGGACCTTCTAAAGCTTGAAAAAATCCAGGAGGATCTTGCAGAAAGATTTGGTGATCAACCCACGTTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCGATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAACTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCAGAAGTAATTTCTGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTAGAAGAGGCTCTGGACAGTCTCAATGCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA 1701 0.435 MSCLLPHFNCHLDTFRTHPYALPTHPSKTRLNLCFQPQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAAVAPPSPHLKANFKSTLSAESLLTNEEAVIAAAASEALALAKAAVKVAKDAVLLVKKKPPAEAEYKSHVSSKSDDLLLKWFHQMEAEDGVAEESMGAGAEIMEGVDISPSEEESDLEPSHEELECLQERLSDNIAVRSRRLTERKAKRVRAAEKATTNFASLKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNARERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0014 566 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 27 565 - -
Gso6g0014 566 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 253 402 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 330 554 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 PRINTS Major sigma-70 factor signature 356 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 PRINTS Major sigma-70 factor signature 380 388 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 PRINTS Major sigma-70 factor signature 504 516 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 PRINTS Major sigma-70 factor signature 525 540 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 PRINTS Major sigma-70 factor signature 540 551 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 Gene3D RNA Polymerase Primary Sigma Factor 93 404 - -
Gso6g0014 566 PIRSF Sigma_factor_SigC 20 566 IPR016262 -
Gso6g0014 566 ProSitePatterns Sigma-70 factors family signature 2. 525 551 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 Pfam Sigma-70, region 4 500 552 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 400 451 IPR013324 -
Gso6g0014 566 CDD Sigma70_r4 494 552 - -
Gso6g0014 566 Pfam Sigma-70 region 2 332 401 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gso6g0014 566 Coils Coil 490 510 - -
Gso6g0014 566 Gene3D - 405 481 IPR036388 -
Gso6g0014 566 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 464 563 IPR013324 -
Gso6g0014 566 Gene3D - 486 566 IPR036388 -
Gso6g0014 566 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 27 565 - -
Gso6g0014 566 Pfam Sigma-70 region 3 411 487 IPR007624 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0014 Gso-Chr6 173798 178710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0014 - - gmx:106799192 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0015 4 174426 179489 Gso6g0014 6 173798 178710 GST