Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0003 ATGGCGAAAGTTTTCTGTGATTTTCGGTTTCTTCTCTTGATTGCAGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACACAATCAGAATATGCTGATCGCCTCGCTGCAGCTATCGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCGCTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTGGAAGAAGAGCAGAAACGTCGAGACCAAGAATGTGGACAAACAAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTGCAGAGGCTGATTGATAAAGTGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTGGAGAGGACTATTAATTCTGTATTGAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCTGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTGATCATTCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGACTCTCCTTGACAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCAGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCACAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATTTCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATCAATGGATTTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAACGTTGTTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATATAATATAGATGGCGATGTGCGTATCAAATATGAAGATCAGTCAGACTTTGAAAACATTGCTCGCCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGTGCCCAGGACAGCCTATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATATTTGAAGCTACTTCAGATCGAAGAGTCTTAA 1335 0.4082 MAKVFCDFRFLLLIAAGVFIYIQMRLFATQSEYADRLAAAIEAENHCTSQTRSLIDQISLQQGRIVALEEEQKRRDQECGQTKSLVQDLERKDLQRLIDKVQVPVAAVVIMACNRADYLERTINSVLKYQRPISSRYPLFVSQDGSNPNVKSKALSYDQLSYMQHLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEAAATLLDKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQFLEPIKLNDVKVDWKSMDLSYLLEDKYSMHFANVVKKATPVYGADMVLKAYNIDGDVRIKYEDQSDFENIARQFGIFQEWKDGVPRTAYKGVVVFRYQTSRRIFLVGPEYLKLLQIEES* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0003 444 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 104 327 IPR029044 -
Gso6g0003 444 Gene3D - 366 440 - -
Gso6g0003 444 PANTHER PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 442 - -
Gso6g0003 444 PANTHER ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED 1 442 - -
Gso6g0003 444 SUPERFAMILY Nucleotide-diphospho-sugar transferases 107 441 IPR029044 -
Gso6g0003 444 CDD GT13_GLCNAC-TI 105 434 - -
Gso6g0003 444 Pfam GNT-I family 15 440 IPR004139 GO:0006486|GO:0008375
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0003 Gso-Chr6 28804 53308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0003 1 444 Glycosyltransferase AT4G38240 72.297 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0003 K00726 - gmx:100795005 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0004 4 54884 69421 Gso6g0003 6 28804 53308 GST