Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1988 ATGGCAAAAGTTGTTTTGTCTATAATATCTACTCAGTCAGCACATACCTACAGCGAACTCTTAAACAGAAATAATAACATCTTAATTTTCATTCAAACCGTTTTGTTAGGAAAAATGGGTCCGAAATTGGCGAAAACAGGGTCTTTCCGTCACGGTTTGGCGGAGAAGAAGGAGAAGCTTCTCTCTGCGTCGGCGAAGAGTAGTAGTAGTTATTCTGAGATAGGTATTGACATAACCACGCGAGAGGAAGACGAAGAGCAATCGTGGTGGAACACGTTTAAGCGCGTGGCTGGGAAGGCATTGGAAATGGGTCGCTCTGATCCAAGGAAGATTATCTTCTCTGCAAAATTGGGTCTTGCTTTGACCATTCTCTCCCTTTTGATTTTCCTCAAAGAACCCTTCGCCGATTTGAGCAGCTACTGCGTCTGGGCCATTCTAACTGTTGTCGTAGTCTTTGAATTCAACATAGGGGCAACTCTGAGCAAAGGGGTAAACGGTGGAATGGGGACCATGTTGGCTGGAGGACTTGCTGTGGGCATGGCAGAGTTATCAACATTGGGTGGAAAATGGGAGGAACTTATAATCATTATGTGCACCTTCATTGTAGGATTTTGTGCCACCTATACAAAGCTATACCCTACTTTGAAGCCTTATGAGTACGGGTTCCGCATGTTCTTGATCACCTATTGTTTCATCACTGTATCCGGGTATCAAACAGGGGAATTTGTTGATACAGCTATAAATAGATTTGTTCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTCAATATCTGCATATATCCAATCTGGGCTGGTGAGGATCTGCATGATCTTGTCACAAAAAATTTCATGGGTGTTGCAACATCTTTGGAAGGTGTTGTCAATCACTACCTTCATTGTGTTGAATATAAGAAGGTGCCATCTAAAATTCTTACTTACCAAGCTGCTGATGACCCAATTTACAGTGGCTACAGATCAGCTGTTGAATCTACAAGTAAAGAAGATTCATTGATGGGATTTGCTGTCTGGGAACCACCACATGGTCATTACAAAATGCTTAAGTATCCATGGAAGAATTATGTGAAATTAAGTGGGGCTCTAAGGCACTGTGCGTTTATGGTCATGGCTATGCATGGGTGCATACTTTCTGAAATACAGGCCCCAGCTGAGAAGAGACAAGTTTTCCGCAGTGAGCTTCAGAGGGTAGGTTCTGAAGGAGCAAAAGTGTTGCGTGAACTTGGAAACAAAGTTAAAAAGATGGAGAAACTAGGTCGTGGAGACTTGCTGTATGAAGTGCACGAGGCTGCAGAGGAATTGCAACAGAAGATCGATAAAAAATCTTACCTTCTTGTCAATTCAGAGAGCTGGGAAATTGGAAACCACTCAAGAGAAGAGAGTGATCCTCAACAACAAGGCCTCTTTAACATGGACGAAGAAAGAAAAATTCTCGAGTATAAGTCTCTCAGTGAAGCAGTACTTGATCTCAGAACAGTTCAAGTTCCAAATACTTGGGAAGGAAATGTAACTCTAGGCAATAACCCTGGTGTGCCTGCAACCGATGCCTCTGAAAACATGTTCAGGAAAAAGATATATTGGCCTTCTCATATTTATTACAATAAATCGAAATCGGAGGTCGAAGAGGGACAAGAGTCAAAAACTTACGAAAGTGCTAGTGCACTATCTCTAACAACATTTACATCGCTTTTAATTGAGTTTGTAGCAAGGCTTCAAAACCTGGTGGATTCATTTGAGGAATTAAGTGAAGTAGCAAACTTTGTTGACCCCCTTGAGCAACAAGCACCAGTAGCAATAGCATCTCATGGGTTTTGGACCCGGTTGTTTAACTGCTGCAAATTTAAGGACTGA 1869 0.4222 MAKVVLSIISTQSAHTYSELLNRNNNILIFIQTVLLGKMGPKLAKTGSFRHGLAEKKEKLLSASAKSSSSYSEIGIDITTREEDEEQSWWNTFKRVAGKALEMGRSDPRKIIFSAKLGLALTILSLLIFLKEPFADLSSYCVWAILTVVVVFEFNIGATLSKGVNGGMGTMLAGGLAVGMAELSTLGGKWEELIIIMCTFIVGFCATYTKLYPTLKPYEYGFRMFLITYCFITVSGYQTGEFVDTAINRFVLIALGAAVSLGVNICIYPIWAGEDLHDLVTKNFMGVATSLEGVVNHYLHCVEYKKVPSKILTYQAADDPIYSGYRSAVESTSKEDSLMGFAVWEPPHGHYKMLKYPWKNYVKLSGALRHCAFMVMAMHGCILSEIQAPAEKRQVFRSELQRVGSEGAKVLRELGNKVKKMEKLGRGDLLYEVHEAAEELQQKIDKKSYLLVNSESWEIGNHSREESDPQQQGLFNMDEERKILEYKSLSEAVLDLRTVQVPNTWEGNVTLGNNPGVPATDASENMFRKKIYWPSHIYYNKSKSEVEEGQESKTYESASALSLTTFTSLLIEFVARLQNLVDSFEELSEVANFVDPLEQQAPVAIASHGFWTRLFNCCKFKD* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1988 622 Pfam Aluminium activated malate transporter 102 588 IPR020966 GO:0015743
Gso5g1988 622 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 39 621 - -
Gso5g1988 622 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 39 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1988 Gso-Chr5 42972957 42977528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1988 44 596 Miscellaneous Gene Families AT3G18440 60.477 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1988 - - gmx:100813638 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1988 5 42972957 42977528 Gso7g0777 7 8551859 8557462 PCT
Gso5g1988 5 42972957 42977528 Gso9g1525 9 39512770 39518956 PCT
Gso7g0777 7 8551859 8557462 Gso5g1988 5 42972957 42977528 PCT
Gso9g1525 9 39512770 39518956 Gso5g1988 5 42972957 42977528 PCT