Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1631 ATGGATTCGAGTTCGGGGCATCAAGAATTCGATTATTTGTTTAAGTTGTTGATGATTGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCTCCGATGCTTTTGAAGATCTCTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTGAAGCTTGCAATTTGGGATACTGCTGGCCAGGAGAGGTTCAGAACACTGACGAATTCTTATTACCGAGGGGCACAAGGAATCATCATGGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACTAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTCGAAGAGCTTGTTTTGAAGATTTTGGATACACCTAGCCTCATAGCCGAGGGCTCAAAGGGTGTTAAAAAGAACATTTTTAAGGAGAGGCCACCCCAGTCTGATGCATCCACAAGTAGTTGTTGCTGA 630 0.419 MDSSSGHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTNSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLIAEGSKGVKKNIFKERPPQSDASTSSCC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1631 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Gso5g1631 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Gso5g1631 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Gso5g1631 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Gso5g1631 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Gso5g1631 209 SMART ras_sub_4 11 178 - -
Gso5g1631 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Gso5g1631 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Gso5g1631 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 185 IPR027417 -
Gso5g1631 209 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Gso5g1631 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Gso5g1631 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Gso5g1631 209 PANTHER DRAB5-RELATED 1 209 - -
Gso5g1631 209 SMART rab_sub_5 14 178 - -
Gso5g1631 209 Gene3D - 7 209 IPR027417 -
Gso5g1631 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Gso5g1631 209 SMART ran_sub_2 19 204 - -
Gso5g1631 209 CDD Rab18 14 175 - -
Gso5g1631 209 SMART arf_sub_2 1 179 - -
Gso5g1631 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1631 Gso-Chr5 39646898 39650690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1631 15 168 EF-hand Containing Proteins AT5G27540 25.625 7.29e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1631 K07910 - gmx:100787603 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1631 5 39646898 39650690 Gso4g1784 4 48019863 48029907 PCT
Gso5g1631 5 39646898 39650690 Gso6g1295 6 12626568 12630434 PCT
Gso4g1784 4 48019863 48029907 Gso5g1631 5 39646898 39650690 PCT
Gso6g1295 6 12626568 12630434 Gso5g1631 5 39646898 39650690 PCT