Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1497 ATGGCAGGTGCGGGTGCAGGAGGAGGGTATGGGGACGCGAACCAGAGGATAGACTACGTGTTCAAGGTGGTGCTGATAGGGGACTCGGCGGTGGGGAAGTCGCAGATACTAGCTCGGTTTGCGAGGAACGAGTTCAGCTTGGACTCCAAGTCCACCATCGGTGTTGAATTTCAGACGAGGACTTTGGTTATCGATCACAAGACCGTTAAGGCTCAGATCTGGGACACTGCCGGCCAAGAACGATACAGAGCAGTTACGAGTGCATATTACAGGGGTGCTGTGGGGGCAATGTTGGTTTATGACATCACTAAACGCCAAACCTTTGATCACATACCACGTTGGTTAGAAGAACTGCGCAACCATGCTGACAAGAACATAGTCATCATTCTTACAGGCAACAAATGTGATCTTGAGAACCAGCGTGACGTACCCACTGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGGTTGTTTTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCCTTCATAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAACCTAACTGCTGATGAAAATCAGGGAAATGGGAACTCAGCATCTTTGTCTGGCCAGAAGATTATCGTTCCAGGCCCTGCACAGGAAATCCCTGCTAAGAGGAATATGTGTTGTCAATCATCTTGA 690 0.4725 MAGAGAGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILTGNKCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTADENQGNGNSASLSGQKIIVPGPAQEIPAKRNMCCQSS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1497 229 PANTHER - 4 228 - -
Gso5g1497 229 ProSiteProfiles small GTPase Ras family profile. 13 211 IPR001806 GO:0003924|GO:0005525
Gso5g1497 229 SMART ran_sub_2 26 224 - -
Gso5g1497 229 Gene3D - 13 224 IPR027417 -
Gso5g1497 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 190 IPR027417 -
Gso5g1497 229 SMART ras_sub_4 18 184 - -
Gso5g1497 229 Pfam Ras family 22 182 IPR001806 GO:0003924|GO:0005525
Gso5g1497 229 SMART rho_sub_3 23 180 IPR001806 GO:0003924|GO:0005525
Gso5g1497 229 PANTHER RAB GTPASE-LIKE PROTEIN A1D 4 228 - -
Gso5g1497 229 TIGRFAM small_GTP: small GTP-binding protein domain 20 177 IPR005225 GO:0005525
Gso5g1497 229 ProSiteProfiles small GTPase Rab1 family profile. 16 226 - -
Gso5g1497 229 ProSiteProfiles small GTPase Rho family profile. 14 182 - -
Gso5g1497 229 SMART arf_sub_2 6 188 - -
Gso5g1497 229 SMART rab_sub_5 21 184 - -
Gso5g1497 229 CDD Rab11_like 18 182 - -
Gso5g1497 229 PRINTS Transforming protein P21 ras signature 21 42 - -
Gso5g1497 229 PRINTS Transforming protein P21 ras signature 44 60 - -
Gso5g1497 229 PRINTS Transforming protein P21 ras signature 62 84 - -
Gso5g1497 229 PRINTS Transforming protein P21 ras signature 124 137 - -
Gso5g1497 229 PRINTS Transforming protein P21 ras signature 159 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1497 Gso-Chr5 38431612 38434807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1497 K07904 - gmx:547878 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1497 5 38431612 38434807 Gso8g1127 8 10353494 10356607 GST
Gso5g1497 5 38431612 38434807 Gso18g0138 18 1163342 1166796 PCT