Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2124 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCTGATCCCGGTAGGGACAGTGCCACGGTTCAAGCTTTCCTCGCGAAAATGGAAGCGGATTTCAGTGCTCATCCACTTTGGGCTGGTTGCTCCGAAGAGGAACTCGCAAGTGCCGGTGAAGGACTTGAGAAGTATGTTATGACAAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAATTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAATTTATTCGACCTGAAAATTTGGATATCAAGCCAGCATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTGCAGAAGATCAACATGTACAAGGCACCCAGGGATAAACTTGTCTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGGTTGCTTCCAGAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTCTCTGCTGAGTCATTCATCTCTAACATCGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGGGAAACATGGAATTTGCTCGTGCTATGCTTTCAGGTATTTCGGCTGATACACAAGATCCTGGTTCACCATATCAAAATAATGGACATCATACAAGAGCAGAACCCACTAAGCACAAAGCTTTGATTGATCATAACGACCCTGCACTACGAACTCCATCATCTGTTGTGAAATCAGAAAGCAAGAAAGTGACTTTTGCAGATGAATCATTGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATTTTAAAGGAGGACAAGTTGAATGCAGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACCTAACAGTAGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCCAAAGGGTTAGGAATCTCTCCTACATCTCTTCCACCATCCAATTCCCAAGATAATTCTGAAGGCCATGCTGAAGTAGATTCTTCAGACGGTGGACCTCTAGATGACAATAATAAATCAGAAGAATCTATTGATACAACAGAGGATAGTTCAGATAAAGTTTCACTTGAGGAGAGGAAAATTGAATCTGGTCTGCCCAAGGATGAGCCAGTTGCTCCTGAGGGTGATGCCCCCCCTTAA 1398 0.4192 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPGRDSATVQAFLAKMEADFSAHPLWAGCSEEELASAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQQFIRPENLDIKPAFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVASRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFEGNMEFARAMLSGISADTQDPGSPYQNNGHHTRAEPTKHKALIDHNDPALRTPSSVVKSESKKVTFADESLITKVPSLSDLENKGASMILKEDKLNAVFGEFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLPPSNSQDNSEGHAEVDSSDGGPLDDNNKSEESIDTTEDSSDKVSLEERKIESGLPKDEPVAPEGDAPP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2124 465 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Gso4g2124 465 SUPERFAMILY VPS9 domain 11 256 IPR037191 -
Gso4g2124 465 Gene3D - 17 97 - -
Gso4g2124 465 SMART vps9_2 135 254 IPR003123 -
Gso4g2124 465 MobiDBLite consensus disorder prediction 409 455 - -
Gso4g2124 465 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Gso4g2124 465 Gene3D VPS9 domain 99 265 IPR037191 -
Gso4g2124 465 MobiDBLite consensus disorder prediction 394 465 - -
Gso4g2124 465 PANTHER BNAC09G47180D PROTEIN 1 407 - -
Gso4g2124 465 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 407 IPR045046 GO:0005085|GO:0016192
Gso4g2124 465 MobiDBLite consensus disorder prediction 394 408 - -
Gso4g2124 465 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2124 Gso-Chr4 51727637 51732197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2124 K20131 - gmx:100792686 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2124 4 51727637 51732197 Gso4g2124 4 51727637 51732197 ECH