Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2056 ATGGAACCGCCGGAGTGCCCGGTGTGTCTTCAATCCTTCGACGAGCGCGACGCAATTCATCGTGTCTTATCATGTGGTCACTCCGTCTGCCAAACTTGCCTCGCGGAGCTTCCGCAGCCGTACCCAGACATTATTCGGTTCCCCACGTGCACCCAGCTCGTGAAGTATCCTTCTCATTTCTCAACAAGGCCCTTCCTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCCCTCCAACACTCCCCTTCTTCCTCCTCCGGATTGGATTCTCCCGCACTACGCCGTTTCAACCGGTGATGTTGGTGTTCGCCGGTTCAGTTCAATATCTTCGTCCAAGGGTAGGATTTGCTTCGGAGTTAACCGCAGCGTGGTTTGGAGAGTTGGATAAAGGTGGGATTTTTAGTTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTGCTTTCCATCTGGAGGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGAATTTGTGTTGATTTGAATGAGGCATTGATGATGGGAAGGAAGTTAGTGAATGCTGTTTCCACTAAACACGAAGAAGAAGCAACGTGTAAGGATTGCTTGGAAAATGAGGTTTTTGCAAGCCCTGAGGTTTTGTATGAATTATTGCACAAGAGGGGCACTTCTCTGGATAGTGGGCATTCGAGATATCCAATTGGATATGGCTCGGATGTATGGTCATTGGCTTGTGTACTTCTGCGGCTTCTTATTGGAAGTGCGCTGCCTCGGAATACCTTAAAAATGAAGGAAGAGAATGACGGTGATATCTCAGCTAGTTACGTGTGTTGGGTGGAGAAAGTTAGTTCTGTTATGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGAAGATTCTTTGTAAATGTTTGGATGTTAATCCAGGAAACCTCAATTTGGTGGATGTAAGGAAATGCATTCAGGATATGCTAGTCAAACCTCAATTTGATTTTCTGGGCAACTTGATAAGTAGGGACAGCACTTGTCACTGCTTGGTTCTAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGGACCGATTGAACATGAGTTGCAGGAGAAAGAAAGTGACAGTCAACCAAATTTTCTTCAAAATGGCAAAGACAAATCTGATGAAGACTTTGCTGCTGGCTCACCTAAGGGAATGACTGAACACAAAGATCTGCGGGGAAAAAGTAAGAAGTCATAA 1242 0.4549 MEPPECPVCLQSFDERDAIHRVLSCGHSVCQTCLAELPQPYPDIIRFPTCTQLVKYPSHFSTRPFLSSQKHRPPQTLPPTLPFFLLRIGFSRTTPFQPVMLVFAGSVQYLRPRVGFASELTAAWFGELDKGGIFSFLMIGKGICEAVLAFHLEGLVAGCLGLSCFSFDELGGICVDLNEALMMGRKLVNAVSTKHEEEATCKDCLENEVFASPEVLYELLHKRGTSLDSGHSRYPIGYGSDVWSLACVLLRLLIGSALPRNTLKMKEENDGDISASYVCWVEKVSSVMEDKLGSEYLSLRKILCKCLDVNPGNLNLVDVRKCIQDMLVKPQFDFLGNLISRDSTCHCLVLGELCLLPKQSSNGPIEHELQEKESDSQPNFLQNGKDKSDEDFAAGSPKGMTEHKDLRGKSKKS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2056 413 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gso4g2056 413 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Gso4g2056 413 PANTHER - 136 368 IPR044715 -
Gso4g2056 413 PANTHER - 2 58 IPR044715 -
Gso4g2056 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Gso4g2056 413 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 58 - -
Gso4g2056 413 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 136 368 - -
Gso4g2056 413 MobiDBLite consensus disorder prediction 384 407 - -
Gso4g2056 413 Pfam RING-type zinc-finger 6 34 IPR027370 -
Gso4g2056 413 MobiDBLite consensus disorder prediction 365 413 - -
Gso4g2056 413 SUPERFAMILY RING/U-box 4 59 - -
Gso4g2056 413 Gene3D Transferase(Phosphotransferase) domain 1 137 333 - -
Gso4g2056 413 SUPERFAMILY Protein kinase-like (PK-like) 136 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2056 Gso-Chr4 51006270 51007890 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2056 - K03070 gsj:114410920 838.565