Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2037 ATGGGTGTAAGTGCAGCTTCTATACTGAACCAGCTCCTCCGCAAGCAAAACCTGAAACCACATCCACACTCACAAACCCAACCCGCCACCAATGCAGTGATCAACACGATCCTCACGTACCTCAAAGCGGGTCGCATCCGAAAAGCCACTTCCATTCTCTTCGCCTTCCCCAAGCCCTTCCCTTTCTCTCTCTACGCCCTCTTCTTCCGCCTCTGCTCCTCCCACCGCGCCGTCGTGGAGGCCCGCAAGGTCGAGTCCCACCTGCTCACCTTCTCCCCCAACCCCCCCACCTTCCTCCTCAACCGCGCCATCGAAGCCTACGCCAAATGCCACTGCCTCCGCGACGCCCGCGAACTGTTCGACGAAATGCCCCAACCAGATGGCGGCTCCTGGAACGCCCTCATTACCGCTTATTCCCAATTGGGTTTCCCCAACGAGACCTTTTCCTTGTTCCTGTGCATGACTAGGTCTGGTTTTTTCCCTACTGAGGTTACTTTTGCTAGCGTTCTCGCCTCTTGTGCTGCTTCTTCTGAGCTTCTTCTTTCCAAGCAGGTTCATGGGTTGGTGACAAAGTTTGGCTTTTGTGGCAACGTGATTCTCGGGAGTTCCCTTGTTGATGTTTATGGAAAGTGCGGGGTAATGGCTGATGCTCGCAGGATGTTTCATGAGATTCCGCAGCCTAATGCTGTCACTTGGAATGTGATAGTGAGGCGGTATCTCGATGCCGGTGATGCAAAGGAGGCGGTTTTCATGTTCTCGCGGATGTTTTCCACCTCGGCGGTTAGGCCGATGAATTTTACTTTCTCTAATGCTCTTGTTGCTTGTTCCAGCGTGTCTGCACTCCGGGAGGGGGTGCAGATTCATGGGGTGGTTGTGAAGTTGGGTCTCCGTGAGGATAATGTTGTTTCAAGCTCGCTTGTGAACATGTATGTCAAGTGTGGTAGGCTGGAGGATGGTTTTCAGGTTTTTGATCAGCTTGGGTTTAGAGATTTGGTGTGTTGGACTTCCATTGTGTCGGGGTATGCGATGAGTGGGAAAACTTTGGAGGCAAGAGAGTTCTTTGATGAGATGCCTGAACGGAATGTGATCTCGTGGAATGCAATGTTGGCGGGATATACTCAGTGCTCTGAATGGTCCAAGGCGTTAGACTTTGTGTATCTCATGCTTGATGTGATTAAAGATGTGGATCATGTGACTCTTGGTTTGTTGTTAAATGTTTCGGCGGGCATTTCAGATCATGAAATGGGGAAACAGGTTCATGGATATATCTATAGACATGGCTTCCACTCAGACCTTAGGCTCAGCAATGCCCTTCTTGACATGTATGGCAAATGTGGGAACTTGAACAGCACCAGGGTTTGGTTTAACCAGATGAGTGATAGGCGTGACAGGGTTTCTTGGAATGCTTTGTTGGCTAGCTATGGTCAGCATCAATTAAGTGAACAGGCACTAACAATGTTTTCAAAGATGCAGTGGGAGACAAAACCAACCCAGTATACATTTGTAACCCTTTTGTTAGCATGTGCAAATACCTTTACGCTTTGTCTTGGCAAACAAATTCATGGATTCATCATTAGACATGGATTTCACATAGATACTGTAACCAGAACTGCTTTGGTTTACATGTACTGTAAATGTCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAGAGGGCAGTTTCCAGGGATGTGATCATTTGGAATACCATAATTATGGGATGTGTTCACAACCATAAGGGTAAAGAAGCGCTTGAACTCTTTGTGATAATGGAAGCTGAAGGCATCAAGCCAGACCATGTGACCTTTAAGGGTATACTGCTTGCTTGCATTGAAGAAGGCCTTGTTGAGTTTGGCACTGGATGCTTTAAGTCTATGAGCAGTGAATTCCATGTCCTGCCCCGGATGGAGCATTATGACTGCATGATTGAACTCTACAGTCGGCATAGATACATGGACGAGCTCGAGAATTTTATGAGGACAATGACAATGGAGCCCACACTTCCCATGTTGAAAAGAGTTCTTGATGTCTGTCAGAAAAATGAGTGCCCAAGATTGGGAGAATGGATTGCAGAAAAAATTAATGAATTCAAATACTAA 2097 0.4735 MGVSAASILNQLLRKQNLKPHPHSQTQPATNAVINTILTYLKAGRIRKATSILFAFPKPFPFSLYALFFRLCSSHRAVVEARKVESHLLTFSPNPPTFLLNRAIEAYAKCHCLRDARELFDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLSEQALTMFSKMQWETKPTQYTFVTLLLACANTFTLCLGKQIHGFIIRHGFHIDTVTRTALVYMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEAEGIKPDHVTFKGILLACIEEGLVEFGTGCFKSMSSEFHVLPRMEHYDCMIELYSRHRYMDELENFMRTMTMEPTLPMLKRVLDVCQKNECPRLGEWIAEKINEFKY* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2037 698 Gene3D Tetratricopeptide repeat domain 514 697 IPR011990 GO:0005515
Gso4g2037 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Gso4g2037 698 Pfam PPR repeat family 463 509 IPR002885 -
Gso4g2037 698 Pfam PPR repeat family 562 609 IPR002885 -
Gso4g2037 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 482 571 - -
Gso4g2037 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 572 696 - -
Gso4g2037 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 484 - -
Gso4g2037 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 263 IPR002885 -
Gso4g2037 698 Gene3D Tetratricopeptide repeat domain 413 513 IPR011990 GO:0005515
Gso4g2037 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Gso4g2037 698 TIGRFAM PPR: pentatricopeptide repeat domain 566 598 IPR002885 -
Gso4g2037 698 TIGRFAM PPR: pentatricopeptide repeat domain 332 362 IPR002885 -
Gso4g2037 698 TIGRFAM PPR: pentatricopeptide repeat domain 465 491 IPR002885 -
Gso4g2037 698 TIGRFAM PPR: pentatricopeptide repeat domain 363 389 IPR002885 -
Gso4g2037 698 Gene3D Tetratricopeptide repeat domain 258 412 IPR011990 GO:0005515
Gso4g2037 698 Gene3D Tetratricopeptide repeat domain 31 181 IPR011990 GO:0005515
Gso4g2037 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gso4g2037 698 Gene3D Tetratricopeptide repeat domain 182 257 IPR011990 GO:0005515
Gso4g2037 698 Pfam PPR repeat 363 389 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 304 325 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 436 461 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 332 362 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 230 255 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 103 124 IPR002885 -
Gso4g2037 698 Pfam PPR repeat 130 159 IPR002885 -
Gso4g2037 698 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 484 - -
Gso4g2037 698 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 482 571 - -
Gso4g2037 698 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 572 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2037 Gso-Chr4 50752270 50755813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2037 20 696 Glycoside Hydrolase AT3G49170 27.299 2.66e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2037 - - gmx:100775626 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2037 4 50752270 50755813 Gso4g2037 4 50752270 50755813 ECH