Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2036 ATGGAATTGCATGGCCTGGTACGCACGCTTCAGTCTTGGTCCACGCTTCGTGAAGGGAGGCAACTCCACGTGGCATTCCTTAAAACCGGCATCCTAAACTCCTCCGTCGCCGTAGCAAACCGGCTTCTCCAACTATATTCTCGCTGCCGCAATCTCCAGGATGCGTCCCACTTGTTCGACGAAATGCCCCAAACAAATTCTTTCTCTTGGAACACCCTGGTCCAAGCGCACCTCAACTCAGGTCACACCCACAGTGCCCTCCACTTGTTCAATGCCATGCCTCACAAGACCCACTTCTCATGGAACATGGTCGTTTCCGCATTTGCCAAGTCCGGACACCTCCAACTAGCCCACTCTCTCTTCAATGCCATGCCCTCCAAGAACCACCTCGTCTGGAATTCCATAATTCATAGTTATTCCCGACACGGGCATCCCGGGAAAGCGCTGTTCCTCTTCAAGAGCATGAACTTGGACCCTTCACAAATAGTGTACCGTGATGCCTTTGTGCTGGCCACTGCTCTTGGCGCTTGTGCTGACTCGCTGGCTCTCAACTGTGGGAAACAAGTCCATGCGCGTGTTTTTGTCGATGGCATGGGGTTGGAGCTTGACAGGGTCTTGTGCAGCTCTCTGATTAACCTGTATGGGAAGTGTGGTGATTTGGATAGTGCTGCTCGCATTGTGAGTTTTGTGAGGGATGTGGATGAGTTCTCTTTGTCAGCTTTGATATCTGGTTATGCCAATGCTGGCAGAATGAGGGAGGCAAGAAGTGTTTTTGATAGTAAGGTTGATCCGTGTGCTGTGCTGTGGAATTCGATTATTTCAGGTTATGTGTCCAATGGTGAGGAGGTGGAAGCGGTGAATCTTTTCAGTGCAATGCTTAGGAATGGTGTTCAGGGAGATGCGTCTGCTGTTGCTAATATTTTGAGTGCAGCCAGTGGTTTGCTCGTTGTTGAACTTGTTAAGCAAATGCATGTGTATGCTTGTAAAGCTGGTGTGACTCATGATATAGTGGTTGCTAGTTCTCTTCTTGATGCCTACTCCAAATGTCAAAGCCCTTGTGAAGCTTGCAAGTTGTTTAGTGAGCTCAAAGAGTATGATACCATTTTGCTTAATACTATGATCACTGTGTATTCTAATTGTGGAAGGATTGAAGATGCAAAATTGATTTTTAACACGATGCCTAGTAAAACCTTAATTTCATGGAATTCGATCCTTGTTGGCCTAACTCAGAATGCATGTCCGAGCGAAGCATTGAATATTTTTAGTCAGATGAATAAGCTGGACTTGAAAATGGACAGGTTTAGCTTTGCTAGTGTTATTAGTGCTTGTGCCTGCAGATCATCCCTTGAACTTGGTGAGCAAGTATTTGGTAAAGCTATTACCATCGGGCTTGAATCTGACCAGATAATTTCTACCTCCCTTGTTGATTTTTATTGTAAATGTGGTTTTGTTGAGATAGGGCGAAAAGTTTTTGATGGAATGGTAAAAACTGATGAAGTCTCTTGGAACACAATGTTGATGGGGTATGCCACAAATGGATATGGAATTGAAGCACTGACACTCTTTTGTGAAATGACGTATGGTGGTGTCTGGCCTTCTGCCATTACTTTTACTGGAGTTCTCTCAGCCTGTGATCATAGTGGTTTGGTTGAAGAAGGAAGAAATTTGTTCCATACAATGAAACATTCATATAATATAAATCCAGGGATTGAACATTTCTCTTGCATGGTTGACCTTTTTGCCCGAGCTGGATACTTTGAGGAAGCAATGGATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTGTCAGTATTGAGAGGCTGCATAGCTCATGGAAATAAGACTATTGGCAAGATGGCTGCAGAGCAAATCATTCAGCTTGAACCTGAAAATACAGGTGCTTATATACAATTATCTAACATACTTGCATCTTCTGGGGACTGGGAAGGATCAGCACTAGTAAGAGAACTGATGAGAGATAAACATTTTCAGAAGATTCCTGGTTGCAGTTGGGCAGATTGTTGA 2037 0.4443 MELHGLVRTLQSWSTLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKHFQKIPGCSWADC* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 168 260 IPR011990 GO:0005515
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 3 96 IPR011990 GO:0005515
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 543 669 IPR011990 GO:0005515
Gso4g2036 678 Pfam PPR repeat family 498 544 IPR002885 -
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 276 408 IPR011990 GO:0005515
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 409 542 IPR011990 GO:0005515
Gso4g2036 678 Pfam PPR repeat 399 427 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 572 596 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 40 63 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 237 259 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 99 128 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 206 226 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 131 155 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 472 496 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 371 396 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 68 94 IPR002885 -
Gso4g2036 678 Pfam PPR repeat 267 297 IPR002885 -
Gso4g2036 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Gso4g2036 678 Gene3D Tetratricopeptide repeat domain 97 158 IPR011990 GO:0005515
Gso4g2036 678 PANTHER OS07G0578800 PROTEIN-RELATED 6 678 IPR045215 GO:0003723|GO:0009451
Gso4g2036 678 Pfam E motif 615 675 IPR046848 -
Gso4g2036 678 TIGRFAM PPR: pentatricopeptide repeat domain 99 129 IPR002885 -
Gso4g2036 678 TIGRFAM PPR: pentatricopeptide repeat domain 573 596 IPR002885 -
Gso4g2036 678 TIGRFAM PPR: pentatricopeptide repeat domain 237 259 IPR002885 -
Gso4g2036 678 TIGRFAM PPR: pentatricopeptide repeat domain 131 155 IPR002885 -
Gso4g2036 678 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Gso4g2036 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Gso4g2036 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Gso4g2036 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Gso4g2036 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 96 IPR002885 -
Gso4g2036 678 PANTHER OS03G0849700 PROTEIN 6 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2036 Gso-Chr4 50748691 50751851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2036 16 677 Glycoside Hydrolase AT3G49170 28.592 1.23e-95 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2036 - - gmx:100790756 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2036 4 50748691 50751851 Gso4g2036 4 50748691 50751851 ECH