Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2033 ATGACATCCTGGTTATTGGGAAGGTCTAGTAGGATCTTAATTCATCAACAACAACAGCTTCACAAGGGACCATTTCTTAACTATAATAGCTCTTGTTCCTCTTTTCGATCAACTGAGCCATTTAGGTGCCGTGATGCATTACCGGGTAAGAACTCGTCACCTACCCTTTTCCGCTTTTGGCGTCATGAATCAACCAAAGCTGAGGCACAATTGGAATTGGAGCAAGATGTCACCGAGGATGACCCTAATCAGATAATTGATTTTCCTGGAGGGAAAGTTGGATTTACTTCTGAAATGAGATTCATTTCTGAGTCTCCTCAGAAAAGGGTGCCCTGTTATCGTGTTCTTGATGGCAATGGTGAGATCCTTAAATACAGCGACTATGTACAGGTTGGCAAGGAAATGGGTGTGAAGATGTATTCTGACATGGTCACTCTTCAAACTATGGACAGCATATTCTATGAAGTGCAGAGGCAAGGTAGAATTTCCTTCTACCTCACCCAAATGGGGGAAGAAGCAGTTAACATTGCATCTGCTGCTGCACTTTCTCCTGATGACATCATATTGCCTCAGTACCGAGAGCCTGGAGTTCTATTGTGGCGTGGTTTTACACTGCAGCAATTTGTTCATCAGTGCTTTGGAAACACACATGATTTTGGAAAAGGCAGGCAGATGCCTATACATTATGGTTCTAACAAGCACAATTACTTCACAGTGTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTGGGGGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCAGTCACTTTTTGTGGGGATGGTGCCACCAGTGAGGGAGATTTTCATGCTGCTATGAATTTTGCAGCAGTCATGGAGGCCCCTGTTGTTTTTATCTGTCGTAATAATGGATGGGCCATCAGTACACCTGTAGAAGACCAATTTCGAAGCGATGGTATTGTAGTTAAAGGTAAAGCTTATGGCATCTGGAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTACACACTGCTAGAGAAATCGCTATAAGAGAAAAAAGGCCTGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGGGAACCGGTGAGATTGAATATTGGAAGACGGCAAGGAATCCTGTGAATCGATTCAAAAGATGGGTAGAAAGGAATGATTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTGTTAGGAAGCAGTTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAAAAACCTCCACTTGAGGACTTATTTAGTGATGTCTATGATCAATTGCCATCAAACCTTCAGGAGCAAGAGAGACTACTTAGAAAGACCATCCAGAAGCATCCCAAAGACTACCCTTCTGATGTTCCTTTGTAG 1437 0.4308 MTSWLLGRSSRILIHQQQQLHKGPFLNYNSSCSSFRSTEPFRCRDALPGKNSSPTLFRFWRHESTKAEAQLELEQDVTEDDPNQIIDFPGGKVGFTSEMRFISESPQKRVPCYRVLDGNGEILKYSDYVQVGKEMGVKMYSDMVTLQTMDSIFYEVQRQGRISFYLTQMGEEAVNIASAAALSPDDIILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGIWSIRVDGNDALAVYSAVHTAREIAIREKRPVLIEALTYRVGHHSTSDDSTKYRGTGEIEYWKTARNPVNRFKRWVERNDWWSDKDELELRSSVRKQLMHAIQVAEKAQKPPLEDLFSDVYDQLPSNLQEQERLLRKTIQKHPKDYPSDVPL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2033 478 Pfam Dehydrogenase E1 component 143 438 IPR001017 GO:0016624
Gso4g2033 478 Gene3D - 81 476 - -
Gso4g2033 478 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 46 478 - -
Gso4g2033 478 CDD TPP_E1_PDC_ADC_BCADC 139 431 - -
Gso4g2033 478 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 1, MITOCHONDRIAL-LIKE 46 478 - -
Gso4g2033 478 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 110 473 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2033 Gso-Chr4 50728618 50734566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2033 57 315 Acyl Lipid Metabolism Gene Families AT1G21400 71.154 2.47e-137 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2033 K00166 - gmx:100789693 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2033 4 50728618 50734566 Gso4g2033 4 50728618 50734566 ECH