LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1993	ATGGTGAAGCTAGCTTCCGCAAGGGTCTTCCGCACCTACGGCCCGGGCCTGGCCAAGAACCGCTACGAGTACATCAACGCCGCCCTCTATCTCATTGCCTCCCTCGTCCTTCTGTCGGGCCTGGCGGCCCAGCTTTCTTCCGAAGCCCGATCCGGCCTGGTGCTTATCATCGCCGCCTTGGCCATCATCCTCCTCGTCAACCTCCATGACCTCTTCGCCCACCTCGTCGGCATCGATTTCCGGTTGCCCTTGATCGCCTTCGACCTTCAACTCGCCTTCGTCGAGTTCGCGGTCCCTGTCATTCAGATGTTCGGAACGCTTCTTGCCTTTCTAGGCGTCTTCTTCCTTTTTATTCAGGAAGAGAAAGGATATGGGTACTTCAAATTGGAAAAGCATGCTCTGAACATGCTGGTTGCTGGTCCTGTATTGTGGGTGATAGGATCGATTCATAATTCGTGCCAAATTTATGAGAGAGCGGATGGTCATGTGCAAATCTTGCAGCAGTGTGTGTATATTCCATTTTTGATGGGGAGTTTGTCATTCATGCTTAGTGCAATTCTCAATTATCACGAGAAATCTAGAGATATCCACCATGGCCTTCACTTACTTGGTGGTACTTGGATCTGGCTAGGCATCTTTGGAAGCCTAATGTTCTTTATTGGTGGATTGACAAACTTAATCAAAGTGTTCAAGATGCAACAAATGAATGGAATTAGGCTGGAGAAACTGCGAGGTGAAGCACATGAACGACTGCTGAGTGCGAGAGAAGCACAGATTCCCCTGATCATGGAACATCAAACAAATATAAGCCATCAACCTCAAGAGACCAAAGTTACTTTACCTCTTCCTACTCCTTACAAGGATGTCCTTATTGGTCAGACTAACGTTGAAATTTCTAATATTTTTTTTAATAAAAATGAAAAATCTCACCTATATAAATATGTGGTTACGATCCAGCGTGTAAAGGCCTTGTCTTTGCCCGCGGTGCTCCTGTTGATAACGGAGAAGCTCCTTCTTTATCGTTTCCCTTTTTTGAGAACCCCAATCCCGTTAACTCGTAAAAAAAAAAAAAAACCAGAGCCCTTCTCGTCCTCTCAATTCTCTCAGTCCAAGGGGCTGCAAATTTTCTGGTTCTTTTCGACAGATTTTGAGTCATTGTTTGAAATGGCATCGGTATCTAGTCAGCCACAGTTCCGTTACACTCAGCCGCCGTCAAAGGTGCTTCATTTGAGGAACTTGCCGTGGGAGTGCACAGAGGAGGAACTGATTGAGCTTGGGAAGCCGTTTGGCAAAGTTGTTAACACAAAATGCAATGTTGGGGCAAATAGAAATCAAGCTTTTATTGAATTTGCAGATTTGAATCAAGCCATTGCAATGATATCATACTATGCCTCATCATCAGAGCCTGCTCAAGTACGAGGGAAAACTGTATACCTACAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTCCTGGGAATGTATTGTTGGTAACGATTGAGGGTGCAGATGCACGTCTTGTCAGCATTGATGTCTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTCGAGAAGACAGCAGGATTTCAGGCACTGGTGCAATTCTCAGATGCAGAGACTGCCACCTCTGCGAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTGCCTGAGCATATGGGACCATGTACCCTTAGGATCACTTATTCTGGACATTCAGATTTAAGTGTAAAGTTTCAAAGCCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTGGAGGGAAGTGGACAGGCTATGGTTGGCTTGGATGGGAAAAGACTGGAGGCTGAGAGTAATGTTCTCCTTGCATCTATTGAAAACATGCAATATGCCGTAACACTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGTCCTGTCCAAAAAATTGCAATGTTCGATAAGAATGGTGGTTTGCAGGCTCTGATTCAATTTCCAGATACTCAGACAGCTGTTGTGGCCAAGGAGGCCTTGGAAGGACATTGCATATATGATGGAGGTTTTTGCAAGCTTCACATTTCATATTCACGACATACTGATCTAAGTATAAAGGTCAATAATGATAGGAGCAGAGACTATACCATTCCTAATACCCCTGCTGTGAACGTCCAACCCTCAATTTTAGGGCAACAATCTGTTCCCATGATGGGCCCTCCACAACAACCATACAATGGGTCTCAGGCTGGATGGGGGACAGCTCCACCAGCAACAACGGTTCAGTCTATGCCAATGCAGATGCACAATAATGTTTACATGCCATCTGGAACTATGCCACAACAAATGGCCCCTGGAATGCAATTTCCAAGTTACAACACAGCACAACCTACAACAACATTGCCCTCATATCGATCTGATCGTACTCAATAG	2466	0.4497	MVKLASARVFRTYGPGLAKNRYEYINAALYLIASLVLLSGLAAQLSSEARSGLVLIIAALAIILLVNLHDLFAHLVGIDFRLPLIAFDLQLAFVEFAVPVIQMFGTLLAFLGVFFLFIQEEKGYGYFKLEKHALNMLVAGPVLWVIGSIHNSCQIYERADGHVQILQQCVYIPFLMGSLSFMLSAILNYHEKSRDIHHGLHLLGGTWIWLGIFGSLMFFIGGLTNLIKVFKMQQMNGIRLEKLRGEAHERLLSAREAQIPLIMEHQTNISHQPQETKVTLPLPTPYKDVLIGQTNVEISNIFFNKNEKSHLYKYVVTIQRVKALSLPAVLLLITEKLLLYRFPFLRTPIPLTRKKKKKPEPFSSSQFSQSKGLQIFWFFSTDFESLFEMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQFPDTQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPAVNVQPSILGQQSVPMMGPPQQPYNGSQAGWGTAPPATTVQSMPMQMHNNVYMPSGTMPQQMAPGMQFPSYNTAQPTTTLPSYRSDRTQ*	822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1993	821	PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	389	817	-	-
	Gso4g1993	821	CDD	RRM1_PTBPH1_PTBPH2	404	484	IPR034792	-
	Gso4g1993	821	SUPERFAMILY	RNA-binding domain, RBD	638	732	IPR035979	GO:0003676
	Gso4g1993	821	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	498	564	-	-
	Gso4g1993	821	CDD	RRM2_PTBPH1_PTBPH2	498	592	IPR034793	-
	Gso4g1993	821	SUPERFAMILY	RNA-binding domain, RBD	394	488	IPR035979	GO:0003676
	Gso4g1993	821	Gene3D	-	393	499	IPR012677	-
	Gso4g1993	821	SUPERFAMILY	RNA-binding domain, RBD	513	606	IPR035979	GO:0003676
	Gso4g1993	821	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	410	461	IPR000504	GO:0003723
	Gso4g1993	821	Gene3D	-	630	735	IPR012677	-
	Gso4g1993	821	Gene3D	-	500	609	IPR012677	-
	Gso4g1993	821	Pfam	RRM-like domain	630	709	IPR021790	-
	Gso4g1993	821	PANTHER	POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2	389	817	-	-
	Gso4g1993	821	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	406	484	IPR000504	GO:0003723
	Gso4g1993	821	SMART	rrm1_1	407	480	IPR000504	GO:0003723
	Gso4g1993	821	SMART	rrm1_1	635	705	IPR000504	GO:0003723
	Gso4g1993	821	MobiDBLite	consensus disorder prediction	796	821	-	-
	Gso4g1993	821	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	631	711	IPR000504	GO:0003723
	Gso4g1993	821	CDD	RRM3_PTBPH1_PTBPH2	631	727	IPR034794	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1993	Gso-Chr4	50259230	50268795	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g1993	K14948		-	csv:101216093	1047.73

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1993	4	50259230	50268795	Gso6g1065	6	10360758	10362599	GST