Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1849 ATGTTGGCCTTCTCCAAGTTCAGGAAAGCAGCAGCGGAGATCTCCTGCGTTTTCCGGCGAAACCTCCTCCGAAGATTCTCCGTTCCGTCCGAGGAACCTGTCCCTTCGAATCCGCAGATGCCTCTTCGTTTCTGCATCTGGGTGGCGCTCAAGTTCGAGACTTTATCCGACCAAGAATACTGTAACATAGTGAGTAGGGTCCTTAGTACCAACAATTTGTTTTCCCTTTACTGGGAAGCTCTCGAGCTTCTCAAGAAATCTGGGATTTTGATAACTTCTGATTCGGTTAGAGCCTTGACTAGAGCGTATTGGCAAGTGGGTCTCGCCGAAAAGGCTATAGAGTCGTTTGGTAGAATGAGTGAGTTTGGTTGCAAGCCTGATAGTCATGCGTATAACACCGTTTTGAATATTGCTTTGAAGAAAGACTTGTTTGTGTTGGCTCTTGCAGTGTATAATTTGATGCTGAAGTCCAATTGTTGTCCTAATGAGTACACTTATAACATGTTGATTGATGGGTTTTGTAAAAATGATAATGTTAAGGGTGCACTTGAGATGCTTGATGAGATGGGTCAATGGGATATAGTGCCAAGTGTTATATCGTTTTCTGCTATTTTTTCCGGTCTGTGTCACGTGAAGAGGGCAGATGAGGCACACAGGTTGTTTAATGTGATGAAAGAAAGAGGGTTCCAGCCTGATTTGATATGTTATAGTGTTTTAATTAATGGGTATTGCAAGTTGGGGAGGTTAGAAGAAGCCATTTCGTTTCTACGGTTGTTAGAGAGAGATGGGTTAGCCCTTGGAATAAAGGGCTACAGTTCTCTGATTGCTGGCTTTTTTAGCGCAAGGAGATACAATGAAGCACATGCGTGGTACGGAAGGATGTTTAAGAAGGGTATTGTGCCGGATGTTGTTTTGTACACCATTTTGATACGAGGTTTGTCGAGCGAGGGAAGGGTTGGTGAAGCTGCCAAGATGTTAGGTGAGATGACCCAGATAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAATTATTAAAGGTCTCTGTGATGTTGGTCTTTTGGATCGAGCACGATCTCTCCAACTTGAGATTTCTGAGCATCAAGGGTTTCATAATGTTTGCACACATACCATTATCATCTGTGACCTGTGTAAGAGAGGAATGGCTGAGAAGGCACAGGAAATATTTAATAAGATGGAGAAGCTTGGATGTTTTCCTTCCATAGTGACCTTCAATGCTCTTATGGATGGACTGTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCCGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATAGTGTTGCTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAACTTTTGGATGCATACAAGCTTCTCATTCAACTTGCTGGTAGTGGGGTTATGCCTGACATTGTGACGTACAATGTTCTAATCAATGGCTTTTGCAAGGCTTCTAATATCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAATAAGGGGCTCTCACCTAACCCTGTTACTTATGGGACACTTATTGATGGGCTTTTCAGGGTTGGCAGAGAAGAGGATGCCTTTAAGATTCATAAGCATATGTTGAAGCATGGGTGTGAACCTAGCTTTGAAGTTTATAGAGCACTTATGACTTGGTTGTGTAGAAAGAAGAGGGTCTCACAGGCCTTCAGTCTTTATTTGGAATATTTGAAGAACCTTCGTGGCAGGGAAGACAATTCAATCAATGCTTTGGAGGAATGTTTTGTCAGAGGAGAAGTGGAACAGGCATTTCGAGGTTTACTAGAATTGGACTTCAGGTTTAGAGATTTTGCTTTAGCTCCATATACAATTCTACTAATTGGATTTTGTCAGGCAGAAAAAGTAAATGAAGCATTACTTATATTTACTGTTCTTGATAAGTTCAATATCAATATCAATCCTGCAAGTTGCGTATATTTGATCCGAGGTCTCAGTGAAAATGGGAGGCTGGATGATGCAGTAAACATCTTCGTTTACACTCTTGACAAAGGTTTCAAGTTGAAGTCAAGTGTTTGTGAGCAACTCCTCAAAATTCTTTCACAAGATAAAAAGGAGTGTGCTATTGATCTTGTTCCTAGGATGAAGTCTGCTGGATACTGTTTAAATGGTTTGTTTTTGCAGAACACATAG 2223 0.4166 MLAFSKFRKAAAEISCVFRRNLLRRFSVPSEEPVPSNPQMPLRFCIWVALKFETLSDQEYCNIVSRVLSTNNLFSLYWEALELLKKSGILITSDSVRALTRAYWQVGLAEKAIESFGRMSEFGCKPDSHAYNTVLNIALKKDLFVLALAVYNLMLKSNCCPNEYTYNMLIDGFCKNDNVKGALEMLDEMGQWDIVPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGIKGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGEMTQIGLVPDAVCYNEIIKGLCDVGLLDRARSLQLEISEHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFRVGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSINALEECFVRGEVEQAFRGLLELDFRFRDFALAPYTILLIGFCQAEKVNEALLIFTVLDKFNININPASCVYLIRGLSENGRLDDAVNIFVYTLDKGFKLKSSVCEQLLKILSQDKKECAIDLVPRMKSAGYCLNGLFLQNT* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1849 740 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 271 590 - -
Gso4g1849 740 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 55 435 - -
Gso4g1849 740 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 608 715 - -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 409 435 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 234 264 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Gso4g1849 740 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Gso4g1849 740 Pfam PPR repeat family 301 350 IPR002885 -
Gso4g1849 740 Pfam PPR repeat family 196 245 IPR002885 -
Gso4g1849 740 Pfam PPR repeat family 126 175 IPR002885 -
Gso4g1849 740 Pfam PPR repeat family 372 420 IPR002885 -
Gso4g1849 740 Pfam PPR repeat family 489 537 IPR002885 -
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 261 329 IPR011990 GO:0005515
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 193 260 IPR011990 GO:0005515
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 47 192 IPR011990 GO:0005515
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 330 442 IPR011990 GO:0005515
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 629 736 IPR011990 GO:0005515
Gso4g1849 740 Gene3D Tetratricopeptide repeat domain 443 622 IPR011990 GO:0005515
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Gso4g1849 740 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Gso4g1849 740 Pfam PPR repeat 670 689 IPR002885 -
Gso4g1849 740 Pfam PPR repeat 633 654 IPR002885 -
Gso4g1849 740 Pfam PPR repeat 98 124 IPR002885 -
Gso4g1849 740 Pfam PPR repeat 271 299 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1849 286 708 Glycosyltransferase AT1G05670 24.766 7.38e-37 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1849 - - gmx:100788461 1033.48