LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1840	ATGGCTGAAGATATCCCGCGAGTTGGTGGGTTTTCGGCTGGTCTGGCTGTGATATTGAACGATAAGGACAGTAAGAAAAATTCGCCAAAAACTCGGCTTCTTTCTTGCTGTGACGATTTGGGTCAGCAGTCTGTGGAGCGAACCCTTGAGTACGTGTTTGGTCTCCCGAACAGATCACTCAATTCATTGACTGGCCTGGTTGATCGTAATTTTATTTGCTCTGTCATTAGGAATGATTTCTCAAGATATAATGTGAAATTGAGTGATTCTCATGGTGAAAGAGATGGGATTTGTATTAATAGTAAAAATGGCAATGGGCATGTTGTTATAGGCCTAGAAGAATCCAGCATCTGCGGTGATATTAAAGTCATCAAGTCACCTTTTCTTATAGAGAGCATGGCGATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTGGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCACAAAGGTGTTGGTGATGCTGATGATTCATATGCTTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGCCAGTCATGGGTTGTTGGTGATATCATTGGATGTTGTATAGATTTAGACCGAGATGAAATATTATTCTACAGGAATGGTAATTCCCTAGGGGTGGCATTCCAAGGAATTCGAAAATTGGGTCCTGGTTTTGGTTATTATCCAGCAGTTTCTCTCTCCCAGGGTGAAAGATGTGAGTTGAACTTTGGAGCTCGACCCTTTAAGTATCCAATTGAAGGTTACCTTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCGGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAAGAGGTTTGTTTCATTGGAAGAAATTTTCCATCCAGCTTCTTATGCCATATGTGAGGAATTATTTTCTATCCTTGAAGCAGATGATGGGATCACAGAGTATATGGTTTGGGGTCCAATGTTGTCTTTCATGTTTGAAGTTTTTGGTTTGCATGCACCCCATGATTACTCAAGCATGGATAAAGTAGTTGAGATTCTGCTACAATTTCAAGGATCACATGTGCTATTTGAACACATCCTAAATGCCCTTTCCTGTGGTTGCAAAATAGCCTCATTAGTTCTAATTGAGTGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACAAGAGGAACTTATGGTTCTTTGGTGGAAGTCACCAGATTTTGAATTCTTGTTTGAAGGGTTTCTTTCACGAAAGACTCCTAACAAACAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAGGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATTGGCAAGATTGAAGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATTCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTACAGAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATATTCCACCACCTGGAGTTTCTAGCAACTCGGTTCTTGTTTCAGTTTACACAGTTGTACTCCATTTTCTATCTGAGGGATTTGCCTTGGGTGACATCTGTGGCTGGTTGAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTGAACAAACTTTTCCTGTACATTTATTTCTGAAAAATGATCCCCATAGAGCTGATATTTCCAGGCTTGGGGGATCCTATAGCCATTTATCAAAGCTACACCCAACAATTGATCATGAAATGGAAGTGATTCAATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGGGTCACCCATTCAACCAGGCAGAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCAGCTAAATACCTGGCCAAAGGTTCTAGTGGTCATTGTAGCTCTATTCCGGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGGAGTTTGAACGATGAGATAACTGATAAACCAAGCTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATACTAATATGTCTACAGATACACTACAAGAAGAAGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCGAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATCAGAGAACGAGCTTGTAGTGAGCAATTGAAGCATTTGAAAGAAGCTCGTAATGAATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTATCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTACTACTGGTTCTTAGCAATATGGATTCGGTGTTTATCTATATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGTTTTCATGTGTTGCGGAAAAGTGATCCTCCCTTTGTTCCATCTACAATTTTCATCAAGCGAGGGCTTGCTTCATTTGTCACCTTTGTAGTTACACATTTCAATGATCCGAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAATACCGGGAGTATTTGGCTACCTTTGAGAGCAATGAGGCCGCCACCCAAAGAATGCCGAAAGCTTTATTATCAGCTTTTGATAACAGATCTTGGATTCCAGTGATGAACATACTCCTACGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCGTCATCAGTTCTTTTCCAACGGTTGCTAAGAGAAGCTTGCATAAGTGATGAAGGGTTGTTTTCATCTTTTCTAAACCGTCTGTTCAATACACTCAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTCTGTACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCGGACACAAACCTCCGAAGGTTAACCGAGTTGGTTGTATTTATCTTAAATCACATTACTTCTGCAGCCGATGCCGAATTCTTTGACTTGTCCCTTAGACGGCATAACCAACCTCCAGAAAAAGTAAACAGAGGCATGATATTGGCACCTCTAGTAGGGATTATCTTAAATTTATTGGATGCTACAAATTCAGCAGAATATCGAGAAAACAATGATCTTTTAGATGTTTTTGCAAGCATGGACTGTCCAGATACTGTTCAGTATGGATTCCAGTATCTTTTGGATTATAACTGGGATGGATCTTTTCGGGGGGAAGCTTATGTGGCAAAATATGAGCAACTAGAGAATTTTCTAAGTCTCCTTACTTGCCGCACTGTGTTACATCATGATAAAGTGGATAGTGTGGGAGATACAGATCTTGATGATGGCTTGTGCTGCATATGTTATGCATGTGAAGCAAATGCTCAAATTGCACCTTGTTCACACAGGTCTTGTTATGGCTGCATTACCAGGCACCTTTTGAACTGCCAAAGATGTTTCTTTTGCAACGCAACAGTGACAGATGTTAGCAAAATTGGTTAG	3810	0.4121	MAEDIPRVGGFSAGLAVILNDKDSKKNSPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLTGLVDRNFICSVIRNDFSRYNVKLSDSHGERDGICINSKNGNGHVVIGLEESSICGDIKVIKSPFLIESMAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKLGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPSKSYFVTQLLQCWSRLLDMHSVERAEHSLVQKLRRVKRFVSLEEIFHPASYAICEELFSILEADDGITEYMVWGPMLSFMFEVFGLHAPHDYSSMDKVVEILLQFQGSHVLFEHILNALSCGCKIASLVLIECPYSGSYSHLALACHLLRQEELMVLWWKSPDFEFLFEGFLSRKTPNKQDLDSMIPTVWWPGSCEDASYEGNMMLTTTALSESIGKIEEKHRDLCRLVIQFIPPTNSPQLPGAVFRTFLQSLLLKNRGAERNIPPPGVSSNSVLVSVYTVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGEQTFPVHLFLKNDPHRADISRLGGSYSHLSKLHPTIDHEMEVIQWDEGCMDSEETRVTHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSSGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNMSTDTLQEEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACSEQLKHLKEARNEYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVMNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACISDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLTRILEFCTHEIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHNQPPEKVNRGMILAPLVGIILNLLDATNSAEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVAKYEQLENFLSLLTCRTVLHHDKVDSVGDTDLDDGLCCICYACEANAQIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSKIG*	1270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1840	1269	Coils	Coil	797	817	-	-
	Gso4g1840	1269	Pfam	SPRY domain	149	267	IPR003877	GO:0005515
	Gso4g1840	1269	SMART	SPRY_3	147	269	IPR003877	GO:0005515
	Gso4g1840	1269	CDD	SPRY_RNF123	138	266	IPR035773	-
	Gso4g1840	1269	SUPERFAMILY	RING/U-box	1215	1264	-	-
	Gso4g1840	1269	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1215	1268	IPR013083	-
	Gso4g1840	1269	Gene3D	-	120	297	IPR043136	-
	Gso4g1840	1269	Pfam	Ubiquitin elongating factor core	725	958	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Gso4g1840	1269	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF123	41	1268	-	-
	Gso4g1840	1269	ProSiteProfiles	B30.2/SPRY domain profile.	77	270	IPR001870	-
	Gso4g1840	1269	CDD	RING-HC_RNF123	1219	1259	-	-
	Gso4g1840	1269	Pfam	E3 ubiquitin-protein ligase RKP N-terminus	1	138	IPR045737	-
	Gso4g1840	1269	MobiDBLite	consensus disorder prediction	709	744	-	-
	Gso4g1840	1269	MobiDBLite	consensus disorder prediction	712	727	-	-
	Gso4g1840	1269	PANTHER	RING FINGER AND SRY DOMAIN-CONTAINING	41	1268	IPR045129	GO:0004842
	Gso4g1840	1269	SUPERFAMILY	Concanavalin A-like lectins/glucanases	131	282	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1840	Gso-Chr4	48639928	48650827	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g1840	K12169		-	gmx:100800617	2583.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1840	4	48639928	48650827	Gso6g1230	6	11986014	11997495	GST