Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1833 ATGGCGACGGTGATGCAGAAGATCAAAGATATCGAAGATGAGATGGCAAAGACCCAAAAAAACAAGGCTACTGCTCATCATCTGGGCTTGCTGAAGGCTAAATTAGCAAAGTTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTAAATAAGTTGACCGGGACATTTTCTGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAGTTGTTGGATCTCCCTGGAATTATCGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGAACATGCAATTGCATTTTGATTGTCCTTGATGCAATTAAGCCAATAACTCATAAGCGTCTTATCGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGACAAAGGTGGACTCAATCTCACCTCAACTGTCACCACAACACATCTAGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAATGCAGATATTACTCTCAGGTATGATGCCACTGCTGATGACCTTATAGATGTCATTGAGGGAAGTAGGGTGTATATACCTTGTATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGTGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGACGTTGTTCAGATTATCAAGAAAGTATAA 915 0.4208 MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLTPSSKGAGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGLNLTSTVTTTHLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYIPCIYVVNKIDQITLEELEILDKLPHYCPISALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1833 304 Coils Coil 1 21 - -
Gso4g1833 304 Pfam C-terminal region of MMR_HSR1 domain 186 272 IPR031662 -
Gso4g1833 304 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 272 303 - -
Gso4g1833 304 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 1 272 - -
Gso4g1833 304 ProSitePatterns GTP1/OBG family signature. 117 130 IPR006074 GO:0005525
Gso4g1833 304 Gene3D - 246 303 IPR012675 -
Gso4g1833 304 TIGRFAM small_GTP: small GTP-binding protein domain 64 216 IPR005225 GO:0005525
Gso4g1833 304 Pfam TGS domain 271 302 IPR004095 -
Gso4g1833 304 Pfam 50S ribosome-binding GTPase 66 158 IPR006073 GO:0005525
Gso4g1833 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 273 IPR027417 -
Gso4g1833 304 PRINTS GTP1/OBG GTP-binding protein family signature 67 87 IPR006073 GO:0005525
Gso4g1833 304 PRINTS GTP1/OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525
Gso4g1833 304 PRINTS GTP1/OBG GTP-binding protein family signature 115 130 IPR006073 GO:0005525
Gso4g1833 304 PRINTS GTP1/OBG GTP-binding protein family signature 132 150 IPR006073 GO:0005525
Gso4g1833 304 Gene3D - 126 239 - -
Gso4g1833 304 Gene3D - 1 86 - -
Gso4g1833 304 PANTHER - 272 303 IPR045001 GO:0003924|GO:0005525
Gso4g1833 304 PANTHER - 1 272 IPR045001 GO:0003924|GO:0005525
Gso4g1833 304 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 65 304 IPR031167 GO:0005525
Gso4g1833 304 CDD DRG 65 272 IPR045001 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1833 Gso-Chr4 48597437 48604737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1833 K06944 - gmx:100797441 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1833 4 48597437 48604737 Gso6g1237 6 12034085 12041097 GST