Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1757 ATGAAACTGTGTTTACTTTTGGTGTTGTTGTTGGTCACATTCACAGTGGCCTTATCTGGGAATGTCAGCTACGACGGTCGCTCGCTTCTCATTGATGGCCAACGCAAGCTTCTTATCTCTGCTTCCATTCATTACCCACGCAGCGTTCCCGCGATGTGGCCTGGTCTCGTTCAAACAGCCAAGGAAGGAGGGGTGGATGTGATTGAAACCTATGTTTTTTGGAATGGCCATGAGCTTTCTCCAGGCAACTATTACTTTGGTGGAAGGTTTGATCTAGTCAAGTTTGCGAAGACTGTTCAGCAGGCTGGGATGTACTTGATTCTTCGAATAGGCCCATTTGTTGCTGCAGAATGGAATTTTGGTGGTGTACCGGTATGGCTGCATTATGTTCCAGGCACGGTATTCCGGACTTACAATCAGCCTTTTATGTATCATATGCAGAAGTTTACAACATACATAGTGAACCTTATGAAACAAGAGAAGCTTTTTGCTTCACAAGGGGGTCCCATAATCTTATCTCAGATAGAAAATGAATATGGGTACTATGAAAATTTTTATAAGGAGGATGGTAAGAAATATGCCTTGTGGGCTGCAAAGATGGCTGTTTCTCAAAATACAGGTGTCCCTTGGATAATGTGCCAACAATGGGATGCTCCAGATCCTGTGATTGATACATGCAATTCATTCTACTGTGACCAATTTACACCTACTTCTCCAAACAGGCCCAAAATTTGGACTGAGAACTGGCCTGGATGGTTTAAAACTTTTGGGGGAAGAGATCCTCACAGGCCAGCAGAAGATGTTGCATTTTCTGTTGCTCGTTTCTTCCAGAAAGGTGGAAGTGTACATAATTACTACATGTATCATGGAGGAACAAATTTTGGGCGTACAGCAGGTGGTCCATTCATTACTACAAGTTATGACTATGATGCCCCAGTAGATGAGTATGGGTTACCTAGACTTCCAAAATGGGGACATCTTAAGGAACTTCACAGAGCTATCAAGTTATGTGAGCACGTATTGCTTAATGGTAAATCAGTTAATATCTCCCTTGGTCCTTCTGTGGAGGCTGATGTCTATACTGACTCATCAGGAGCATGTGCGGCCTTTATTTCTAATGTTGATGATAAAAATGATAAGACAGTGGAATTTCGAAATGCATCATATCACTTGCCAGCTTGGTCAGTTAGCATTCTTCCTGATTGCAAGAATGTAGTATTCAACACAGCTAAGGTTACTTCCCAGACAAATGTAGTTGCAATGATTCCCGAGAGTTTGCAGCAATCAGATAAAGGTGTAAATTCTCTTAAATGGGACATAGTGAAGGAGAAACCAGGAATCTGGGGGAAGGCAGACTTTGTCAAAAATGGTTTTGTTGATCTCATCAATACTACCAAAGATACCACTGACTACCTGTGGCATACAACAAGTATATTTGTAAGTGAGAATGAAGAGTTCTTAAAGAAGGGAAGCAAACCAGTCCTTCTAATTGAATCCACAGGTCATGCTCTCCATGCTTTTGTGAACCAAGAATATCAAGGTACTGGTACTGGAAATGGTACACATTCACCATTCTCTTTTAAGAATCCCATCTCCCTGAGGGCAGGGAAAAATGAAATTGCTTTGTTGTGCTTGACCGTTGGCTTACAGACAGCAGGACCATTTTATGACTTCATAGGGGCAGGACTAACTAGTGTGAAGATCAAGGGACTGAAAAATGGGACAATAGACTTGTCTTCTTATGCCTGGACTTACAAGATTGGAGTGCAAGGAGAATATCTAAGGTTATACCAGGGAAATGGGTTGAATAACGTGAACTGGACATCTACTTCAGAACCACAAAAAATGCAGCCATTGACATGGTACAAGGCTATTGTGGATGCTCCGCCTGGGGATGAACCAGTTGGATTGGATATGTTACATATGGGAAAGGGTCTAGCCTGGTTAAATGGAGAAGAAATAGGAAGATATTGGCCTAGGAAAAGTGAATTCAAGAGTGAAGACTGTGTGAAAGAATGCGATTACAGAGGCAAATTTAATCCTGACAAATGTGACACTGGTTGTGGAGAACCTACACAGAGATGGTACCATGTTCCACGATCTTGGTTCAAGCCATCTGGAAATATTCTTGTTCTTTTTGAGGAGAAAGGTGGAGATCCAGAAAAGATTAAGTTTGTGAGACGGAAAGTATCTGGAGCTTGTGCCCTTGTTGCTGAGGATTACCCCTCTGTTGGACTCCTTTCCCAGGGTGAAGATAAAATACAGAATAACAAAAACGTTCCTTTTGCCCATTTGACATGCCCCAGCAACACTCGTATATCTGCTGTGAAGTTTGCTAGCTTTGGAACCCCCTCTGGGTCATGTGGATCTTACCTCAAGGGAGATTGCCATGATCCCAATTCTAGCACAATTGTTGAGAAGGCATGCCTAAACAAAAACGACTGTGTCATAAAATTAACTGAAGAGAATTTCAAAACCAACTTGTGTCCTGGTTTATCAAGGAAACTTGCAGTGGAAGCAGTCTGTAGTTGA 2532 0.4214 MKLCLLLVLLLVTFTVALSGNVSYDGRSLLIDGQRKLLISASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHELSPGNYYFGGRFDLVKFAKTVQQAGMYLILRIGPFVAAEWNFGGVPVWLHYVPGTVFRTYNQPFMYHMQKFTTYIVNLMKQEKLFASQGGPIILSQIENEYGYYENFYKEDGKKYALWAAKMAVSQNTGVPWIMCQQWDAPDPVIDTCNSFYCDQFTPTSPNRPKIWTENWPGWFKTFGGRDPHRPAEDVAFSVARFFQKGGSVHNYYMYHGGTNFGRTAGGPFITTSYDYDAPVDEYGLPRLPKWGHLKELHRAIKLCEHVLLNGKSVNISLGPSVEADVYTDSSGACAAFISNVDDKNDKTVEFRNASYHLPAWSVSILPDCKNVVFNTAKVTSQTNVVAMIPESLQQSDKGVNSLKWDIVKEKPGIWGKADFVKNGFVDLINTTKDTTDYLWHTTSIFVSENEEFLKKGSKPVLLIESTGHALHAFVNQEYQGTGTGNGTHSPFSFKNPISLRAGKNEIALLCLTVGLQTAGPFYDFIGAGLTSVKIKGLKNGTIDLSSYAWTYKIGVQGEYLRLYQGNGLNNVNWTSTSEPQKMQPLTWYKAIVDAPPGDEPVGLDMLHMGKGLAWLNGEEIGRYWPRKSEFKSEDCVKECDYRGKFNPDKCDTGCGEPTQRWYHVPRSWFKPSGNILVLFEEKGGDPEKIKFVRRKVSGACALVAEDYPSVGLLSQGEDKIQNNKNVPFAHLTCPSNTRISAVKFASFGTPSGSCGSYLKGDCHDPNSSTIVEKACLNKNDCVIKLTEENFKTNLCPGLSRKLAVEAVCS* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1757 843 Pfam Beta-sandwich domain in beta galactosidase 341 412 IPR041392 -
Gso4g1757 843 PANTHER BETA-GALACTOSIDASE RELATED 14 835 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 SUPERFAMILY Galactose-binding domain-like 396 547 IPR008979 -
Gso4g1757 843 Pfam Glycosyl hydrolases family 35 28 333 IPR031330 -
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 32 49 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 53 71 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 108 127 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 165 180 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 244 259 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 281 296 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 301 317 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 617 631 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 PRINTS Glycosyl hydrolase family 35 signature 644 660 IPR001944 GO:0004553|GO:0005975
Gso4g1757 843 Gene3D - 752 843 IPR043159 -
Gso4g1757 843 ProSiteProfiles SUEL-type lectin domain profile. 757 843 IPR000922 GO:0030246
Gso4g1757 843 PANTHER BETA-GALACTOSIDASE 10 14 835 - -
Gso4g1757 843 SUPERFAMILY (Trans)glycosidases 21 338 IPR017853 -
Gso4g1757 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 167 179 IPR019801 GO:0004553|GO:0005975
Gso4g1757 843 Gene3D Glycosidases 18 337 - -
Gso4g1757 843 Gene3D - 593 734 - -
Gso4g1757 843 Pfam Galactose binding lectin domain 765 842 IPR000922 GO:0030246
Gso4g1757 843 SUPERFAMILY Galactose-binding domain-like 583 741 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1757 Gso-Chr4 47683959 47697371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1757 5 731 Glycoside Hydrolase AT5G63810 71.605 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1757 - - gmx:100815037 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1757 4 47683959 47697371 Gso4g1757 4 47683959 47697371 ECH