Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1745 ATGTTGCGCCGAAGCTTCTCGAAGCTCCACCTCAGTCTCAGAGCTCCGGGTTTAGGGTTTCCGACGCGATCGTTCTCGCGCGACGCCGGGAAGAGGTTCGCGGCATTGTGGGGGAACGGTGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTTGTCTGCCCCGCGTTCCGCAACAAAACCCTAAATGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGAGGATGGATGCGTTTATGCTACTGGTCTTAATGATTTTGGACAGCTTGGTGTATCAGAAAGTAAACACTACTCGGTGGAGCCACTTTGTGTTTTTGGAGAGGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATTACAGTGGATGGAGAGCTATACATGTGGGGAAAGAACACAAGCGGGCAGCTTGGACTAGGAAAAAGGGCTCCAAACATAGTGCCTTTGCCAACTAAAGTGGAATACTTGAAGGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCAGTGGCTATTAGTGATGGTGGAGCGGCCTTTAGTTGGGGAATTGGAGTGTCCGGTAGACTTGGTCATGGTCATGAGTCAAGCGTCCTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATACGTAGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAACGGTTGTGTTTTTGTATTTGGTGAAAGAGGAATTGAAAAATTGCGTTTAAAGGAGATGAGCGATGCAACAAAACCATCCTTGATCAGTGAACTTCCATCCTCAAAAGAAGTTGCTTGTGGTGGCTACCACACCTGTGTCCTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCCTCAGATGTCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGGACATTCTCTGAAGTTGGACATTCTTCTAGTGGACAATTGGGTCATGGAAGTGATGTGGATTACATAAATCCTACAAGAGTTTGCTTTGGAGAAGATGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAATATGCATAG 1254 0.4593 MLRRSFSKLHLSLRAPGLGFPTRSFSRDAGKRFAALWGNGDYGRLGLGNLDSQWKPVVCPAFRNKTLNAIACGGAHTLFLTEDGCVYATGLNDFGQLGVSESKHYSVEPLCVFGEEKKVVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLKGINIKMAALGSEHSVAISDGGAAFSWGIGVSGRLGHGHESSVLGFFKSYSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGCVFVFGERGIEKLRLKEMSDATKPSLISELPSSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILEYA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 33 49 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 67 80 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 86 102 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 136 152 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 176 192 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 192 206 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 290 308 IPR000408 -
Gso4g1745 417 PRINTS Chromosome condensation regulator RCC1 signature 348 369 IPR000408 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 416 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 300 350 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 135 186 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 37 80 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 371 413 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 83 132 IPR000408 -
Gso4g1745 417 Pfam Regulator of chromosome condensation (RCC1) repeat 190 241 IPR000408 -
Gso4g1745 417 Gene3D - 28 159 IPR009091 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 84 135 IPR000408 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 301 353 IPR000408 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 190 250 IPR000408 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 32 83 IPR000408 -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 189 IPR000408 -
Gso4g1745 417 Gene3D - 160 416 IPR009091 -
Gso4g1745 417 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 28 417 - -
Gso4g1745 417 PANTHER OS11G0545800 PROTEIN 28 417 - -
Gso4g1745 417 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 251 300 IPR000408 -
Gso4g1745 417 SUPERFAMILY RCC1/BLIP-II 36 414 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1745 Gso-Chr4 47555546 47568777 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1745 - - gmx:100811823 843.958