LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1631	ATGTCCAAATATCCGAATATTAGTGGACACTTTGAAGAGTTCTTGAATGTCAAGGTTGTTAGCGTGCAAGTATTCAGCATGACTAAATACCCAAACATTGGTGAAAGCTTTGAAGAGTTCTTGAATGACAAGGTTGTCAGTGTGCGGATATTCGACATGGCTAAATATTTGAACACTGATGGAAGTTTTGAAGAGTTCTTGAATGTCAAGGTTATTAATGTAATCGCATTGACGCGAGGCAGAAATCGCAAAAAATGGTATCACGGGTCATACGCCGGTCCCGTAGGTGTCACCCGACCCACCTACTTCACTTACCTTTACCTGTCATTTTTCGCTCTTCTTTTTTTACCCTTCTTTCAACCTTTATTAAAACCCTATCTCACTCACTCTCACCCACACACCGTTTGTTCTATTCTTAACTCAACTTCTGCTACCCATTCTCTTCTTCCAAGTCCAACCACGCTTTTCTCTACAGTCATGGGCAAGGTCAAGATCGGAATCAACGGATTTGGAAGAATTGGCCGTTTGGTTGCCAGAGTCGCTCTGCAAAGAGACGATGTGGAGCTCGTTGCCGTTAACGACCCTTTCATTACCACCGATTACATGACATACATGTTTAAATACGACAGTGTTCACGGACACTGGAAGCATCACGATGTCACCGTTAAGGACGAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGGAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGATATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCCGCCGCACATTTGAAGGGTGGTGCGAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGATATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCTCCACTTGCTAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGCCACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGAAAAGTCCTTCCTGCTTTGAACGGAAAATTGACTGGTATGGCATTCCGTGTTCCCACCGTGGATGTCTCTGTTGTTGACCTCACAGTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTGTGGGCGATAGCAGATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAGTGGGGATACAGCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAA	1494	0.4511	MSKYPNISGHFEEFLNVKVVSVQVFSMTKYPNIGESFEEFLNDKVVSVRIFDMAKYLNTDGSFEEFLNVKVINVIALTRGRNRKKWYHGSYAGPVGVTRPTYFTYLYLSFFALLFLPFFQPLLKPYLTHSHPHTVCSILNSTSATHSLLPSPTTLFSTVMGKVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHDVTVKDEKTLLFGDKPVTVFGHRNPEEIPWGSTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDEIKNAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNKNFVKLVSWYDNEWGYSSRVIDLLVFVAKKSF*	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1631	497	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	164	487	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Gso4g1631	497	Gene3D	Dihydrodipicolinate Reductase; domain 2	312	477	-	-
	Gso4g1631	497	SMART	gp_dh_n_7	163	313	IPR020828	GO:0051287
	Gso4g1631	497	PANTHER	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	144	494	IPR020831	GO:0016620
	Gso4g1631	497	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	312	475	-	-
	Gso4g1631	497	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	318	475	IPR020829	GO:0016620
	Gso4g1631	497	Gene3D	-	163	489	-	-
	Gso4g1631	497	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	163	266	IPR020828	GO:0051287
	Gso4g1631	497	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	144	494	-	-
	Gso4g1631	497	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	311	318	IPR020830	GO:0016620
	Gso4g1631	497	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	272	285	IPR020831	GO:0016620
	Gso4g1631	497	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	307	325	IPR020831	GO:0016620
	Gso4g1631	497	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	334	350	IPR020831	GO:0016620
	Gso4g1631	497	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	391	408	IPR020831	GO:0016620
	Gso4g1631	497	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	431	446	IPR020831	GO:0016620
	Gso4g1631	497	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	162	329	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g1631	Gso-Chr4	46097828	46101589	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g1631	K00134		-	gmx:100781161	666.381

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g1631	4	46097828	46101589	Gso6g1457	6	14530900	14533813	GST