Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1558 ATGGTCCGTTTTTGCGGTGCTGTGTGGACCGGTGCCTATCCTCTCTCTGCCGTTGTGTGGCGCGCGCAACGAACTTGCAATTGCAAGTGGATGAATGACCGCAACGACAACGACACTTCCAAAACACATTTTTTGTTTTCTTCCTCAAGTTTCCGAAAACCAAGTGGAATCGCCAATTCTGCAAAAAAAGAGAATGAGATTGCGTGCGACGACGTCGTTTTAGCACCGCCACCCATGACGACTAACTCCGATTCTTCTTCTGCTCCTCTCCACTGGAAGTTCTCCCAAGTACTCGGCCAGCGACTTCCCAACGAGCCTCTCCAAAACGACGACATCATAACCGCCGTTGCGTTCGAGAAACGCGGCGATTACCTCGCCGTCGGCGACCGAGGTGGGCGCGTTGTGATATTCGAACGCGACGATCGGAAAAAGAATGCTAGGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGGCATCCCGAATTTCGTTTCAAAACGGAATTTCAGAGCCACGAGCCCGAGTTTGATTACCTGAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGTCCAACGACAGTTTGCAATTTATTCTTTCAACCAACGACAAAACAATTAAATTGTGGAAGGTTAAGGAACATAAGGTAAAACAAGTTAAAGAAATGGCCCCTCCTTTATGCTCAGAAAATATGCTTTTGGCTGAAAGAAGTTTCGTACCAGGGCTGGAAACCACGGCTAATGGCTATCATTTGGAATGGATAGAGAAGACACCTAAGAATCATTTGCTGCCTCAAGACATTGATGGCGAGATTGGTGGAATGGAAGACCCTATCCGTGCAAAGTGCCAAAAAGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTCATCTCGGCAGATGACCTTAGAATCAATTTGTGGAATCTTGAAGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCATCAAACATGGAGGATCTTACCGAGGTTATAACAGCAGCTGAATTTCATCCTTTGCATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGTCTATCTGATTTGCGACAGGCAGCAATATGTGACCATGCTTCTAGAATGTTTCAACATGGAGAGAGTTCTGGATCAAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTATGGAATCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGTTATATAATAATGACTGCATATTTGACAAATTCGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATGTCGTGCGGATATTCTCCCCGGGTTCTGAAAGGAAGGAAGAGATCAAACTAGAAATTAGAGGAAATTCTCACAGGAAGGTTATTCACCAAGCTAAGTCTCGAGTTAGAAGGCCTTCTCTAAGCAACCTAATACCTCGTGAAATTTACCAGCATGGTTGGCGTTTCCTATACATACACTTTTCACCTTATTCTCTCTTTTTATTTGTGCTTTTACCATTATCTTCCGTTTCATTTTTATTTCAACCTGACGTCCCTTTCTGTTTTGCAGCTCACACTGATTCAGAGTCTAGTAGAGCTGACTTTTCTTGTAACTTAAGCTCCAAGCTGCTACATGTAGCATGGCATCCTACATGCAATCTAGTTGTATGTGCTGCTGAAAGTAGCCTAGTATTATATTATGCGTAG 1863 0.43 MVRFCGAVWTGAYPLSAVVWRAQRTCNCKWMNDRNDNDTSKTHFLFSSSSFRKPSGIANSAKKENEIACDDVVLAPPPMTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFERDDRKKNARNDRRELEQRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVRWWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAERSFVPGLETTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDYETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQGFIRLSDLRQAAICDHASRMFQHGESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRIFSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHGWRFLYIHFSPYSLFLFVLLPLSSVSFLFQPDVPFCFAAHTDSESSRADFSCNLSSKLLHVAWHPTCNLVVCAAESSLVLYYA* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 117 137 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 194 222 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 298 325 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 326 353 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 354 382 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 383 410 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 411 438 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 439 464 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 465 491 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 589 618 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PANTHER OS02G0617600 PROTEIN 575 620 - -
Gso4g1558 620 PANTHER OS02G0617600 PROTEIN 85 538 - -
Gso4g1558 620 PIRSF PPA2_B55 80 620 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 Gene3D - 140 618 IPR015943 GO:0005515
Gso4g1558 620 Coils Coil 136 156 - -
Gso4g1558 620 SMART WD40_4 287 326 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 100 138 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 178 218 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 567 620 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 330 377 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 438 492 IPR001680 GO:0005515
Gso4g1558 620 SMART WD40_4 396 434 IPR001680 GO:0005515
Gso4g1558 620 Pfam WD domain, G-beta repeat 289 326 IPR001680 GO:0005515
Gso4g1558 620 SUPERFAMILY WD40 repeat-like 109 617 IPR036322 GO:0005515
Gso4g1558 620 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 575 620 IPR000009 GO:0000159|GO:0019888
Gso4g1558 620 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 85 538 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1558 Gso-Chr4 45052261 45059771 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1558 K04354 - gmx:100795137 1152.89