Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1327 ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACGCCGCAAAGGGCGGCCCCGCGTCGTTCTGCTCCGTCCTGTGGGACCAGAAAGCGAAACACTTGGTCACCGCGTCCTCCTCCGACGTCGCCGTCTGCATCCACGACCCCCTTTTCCCCTCCTTCGCTCCAAAAACCCTCCGCCACCACCGCGATGGCGTCACTGCCCGGGCCCTCAGCCCCAATTCCACTTGCCTCGCCTCTGGATCCGTCGATCACTCCGTCAAACTCTACAAGTATCCCGGTGGAGAGTTTGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCGTTTAACAAATCAGGGAGCATGCTGGCTGCGGCTGGTGATGATGAGGGTATCAAACTTATAAATACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACATAAAGGGTCTATCACTGGCTTGGCTTTTGACCCTAATGGCGAATACTTAGCCTCCCTGGATTTAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTTAAAGGCATAGCTCCTGGCACTGGGCTGGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGTTGAAAAATGATGTTGTAATGTATGATAGGGACACTGCCGAGAAGGTGTTTTTTTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGTGAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATTTGGGATGTTAGCAAGAAGCAGGACATTGACAGACAGAAGTTTGATGAGAGAGTCTGTTGCATGGCCTGGAAGCCAACTGGGAATGCATTGGCTGTCATTGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCTCCAACCAAGGATATACCGGTGAAGAACAAAAGCAATGGGGTTGTTTATTTTGATGAGGAGGATCCTGAAAATAGTGCAAGTGGAAACTTGAGTGATATTGGTGGAAATAGTAATGAGGAGTCTGAGCCACCTAGCAGGAAAAGATCGCGTAAACACTCTCTGAGTGAGGAAAATTTAGGTGAGGATGGAGGTGAGGAAATTGTATCATATCTGAAGGTTGATACTCACAAGAAACGAAATCGATCAAGCAAGGAAAATTTGGATAGTGGGAATATGGGATTTAGAAGCACCATGGTAACATCCAAGGCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGAAAAAGGCATTTCTTATGCTACAATATGCTAGGATGTATAACCTCTATTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCATTGAATGAGAGTGGGAGCGTATTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTTATGTATCGTCCATTTAGTAGCTGGGCCAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTTCTGCTTGGGTTGCAGCAGTAACTAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGAATGCAGAGAGACGTGTTTTCACTAGATGGGCCAGTGGTTACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATGGCCTTCCCTCAAATGATCAGATGTTAGAGTTTATGGCATTTAATATTCCTCGTGGGACCCAACTTCTTCAAGGTCGCTTGCCACTATCCCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCAAATTTGGGGGTAGACGGATTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACGGGGTTGAATGCAAGCAAGGTATTTTGCGTGGTATGCAAAAAACCTGAAGGCTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACTCCATTGAGTCTTTCGTTTCCTCTTGCTTCCTCTGATTTGGGGGGATCTGAATCCCATGAAAAGGAGTTTATGATGAATAGCTTGCATCTCTATGAGATTCAGAGAACAATGGACGAAATGGATTCTGTTGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCTGCACAAGATAAATGCATTCTGAGGCTTATAGCAGCTTGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTAGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTATGAAGCTTCCAAACCTGGCCGAAAGGTTCAGCTGCATATTAGAGGAAAGGCTACTTGAAGAAGCCAAAAAAGCTATGGAAACCAACATCAAAGAAAATAGTGTTGCACCCGTTACTGCTGATGCTATTCCTGGCAGAAGCAAGGCCCCAACTCACACTGAAACATTAAATGCTGTTACCATGTCATCATCTCCAAAATTATCTGCTACATCATTCGTAAGGAAAGGCATAACACTAGAGGGAGCTAAAGCTGGCACTAGTAAAGCACCAATGGTAAATGAAACTCTGAAGGTAAAGCAGACAGGGGATGAATCAAGTGAAAAGGTGGGGAAGGTGGGAGATAAACGTCAAGTGCAACAAACTTCCCATCCATATGATCCCTCTACGAAGTCCTCAAATAAGAGTGGACTTAACAAGTCAGAGACTAGTTTGGGACAATCAAATCGTTCTTCCAATCCACTTTTGAAGTCAGAGACTAGTTTGGGACAATCAAATCGTTCTTCCAATCCACTTTTGAAGTCAGAGACTAGTTTGGGACAATCAAATCGTCCATCCAATCCATTTTTGAAGGCTACTATCAAGTGA 2985 0.4466 MKVRSMKLKEAHAAKGGPASFCSVLWDQKAKHLVTASSSDVAVCIHDPLFPSFAPKTLRHHRDGVTARALSPNSTCLASGSVDHSVKLYKYPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDLTGTVILWELQSGKIIHNLKGIAPGTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVFFLRGDHIQPICFLCWSPNGEYIATSGLDRQVLIWDVSKKQDIDRQKFDERVCCMAWKPTGNALAVIDVMGKYGIWDNVIPSSMKSPTKDIPVKNKSNGVVYFDEEDPENSASGNLSDIGGNSNEESEPPSRKRSRKHSLSEENLGEDGGEEIVSYLKVDTHKKRNRSSKENLDSGNMGFRSTMVTSKAKMQEAFQPGSTPVQPGKRHFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGSAWVAAVTSFNYLRIFSEGGMQRDVFSLDGPVVTASGFKDKLAVVTHATDGLPSNDQMLEFMAFNIPRGTQLLQGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSKFGGRRIPLFSATKEKSDENYWVTGLNASKVFCVVCKKPEGFPQVMPKPVLTPLSLSFPLASSDLGGSESHEKEFMMNSLHLYEIQRTMDEMDSVGLDTTSLDDDAFNLEAAQDKCILRLIAACCNSDKLVRATELVKLLTLEKSMRGAIKLVTAMKLPNLAERFSCILEERLLEEAKKAMETNIKENSVAPVTADAIPGRSKAPTHTETLNAVTMSSSPKLSATSFVRKGITLEGAKAGTSKAPMVNETLKVKQTGDESSEKVGKVGDKRQVQQTSHPYDPSTKSSNKSGLNKSETSLGQSNRSSNPLLKSETSLGQSNRSSNPLLKSETSLGQSNRPSNPFLKATIK* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1327 994 MobiDBLite consensus disorder prediction 915 994 - -
Gso4g1327 994 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Gso4g1327 994 SUPERFAMILY WD40 repeat-like 18 307 IPR036322 GO:0005515
Gso4g1327 994 Pfam WD domain, G-beta repeat 236 266 IPR001680 GO:0005515
Gso4g1327 994 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Gso4g1327 994 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Gso4g1327 994 MobiDBLite consensus disorder prediction 900 914 - -
Gso4g1327 994 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Gso4g1327 994 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Gso4g1327 994 MobiDBLite consensus disorder prediction 357 375 - -
Gso4g1327 994 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Gso4g1327 994 MobiDBLite consensus disorder prediction 383 401 - -
Gso4g1327 994 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 988 - -
Gso4g1327 994 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Gso4g1327 994 MobiDBLite consensus disorder prediction 891 994 - -
Gso4g1327 994 Gene3D - 2 194 IPR015943 GO:0005515
Gso4g1327 994 MobiDBLite consensus disorder prediction 334 410 - -
Gso4g1327 994 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Gso4g1327 994 MobiDBLite consensus disorder prediction 340 356 - -
Gso4g1327 994 CDD WD40 15 310 - -
Gso4g1327 994 Gene3D - 195 308 IPR015943 GO:0005515
Gso4g1327 994 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Gso4g1327 994 SMART WD40_4 226 266 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 135 174 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 7 47 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 177 223 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 51 90 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 93 132 IPR001680 GO:0005515
Gso4g1327 994 SMART WD40_4 269 307 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1327 Gso-Chr4 37827248 37837439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1327 114 307 Miscellaneous Gene Families AT5G08390 23.590 1.29e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1327 K11274 - gmx:100809300 1961.81