Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0830 ATGGGGAGCTTGAAAGGAGACAGTGGACATGCCAATGGCGAAAATCTTACCGAAGCTCTTTTGCCAACACGAGATGCACAACAACAACATCAAACAGACGACGAGGAACAAAGATTTGGTGACAAGCTCTGGCTTGAAACCAGGAAGTTATGGCTCATTGTGGGGCCCTCTATATTCAGCCGCCTCGCGTCGTTCACCATGAATGTTGTCACCCAAGCCTTCGCCGGTCACTTGGGTGATGTCGAACTCGCTGCCATTTCTATCGCCAACAACGTTCTTGTTGGCTTCAATTTCGGCCTCCTTTTGGGGATGGCGAGCGCGTTGGAGACACTGTGCGGGCAAGCGTTTGGGGCGAAGAGATACCACTTGTTGGGGATATACATGCAGAGGTCATGGATTGTTCTGTTCATGTGCTGTTTCCTGCTGTTGCCGTTTTATGTTTTTGCAACGCCGCTTCTGAAATTCCTAGGACAGCCAGATGACGTGGCAGAGTGGAGCGGGGTGGTGGCAGTGTGGCTCATTCCCCTGCACTTCAGTTTCGCGTTTCAGTTTCCTATGCAGAGATTCCTACAGTGCCAGCTCAAGACAGCAGTTATTGCTTGGGTTTCTCTGCTGGGTTTGGTGGTTAATGTGGTCACAAGCTGGCTCTTCATTTATGTCTGGGATTTTGGACTTTATGGCGCAGCTATTTCTTTGGACATTTCTTGGTGGGTTTTGGTTTTTGGCATGTATGCTTACATTGCCTATGGTGGCTGCCCTTTGACTTGGAATGGTTTCTCCCTTGAAGCTTTTTCTGGACTCTGGGAATTCCTCACACTCTCTTCCGCTTCTGGGGTCATGTTATGCTTAGAGAACTGGTACTACAAGATATTGCTACTTATGACTGGCCAGTTGGAGAATGCCACTATCGCTGTGGATGCCTTGTCTGTATGTATGACCATCAACGGGTGGGAAATGATGATTCCCCTGGCTTTCTTCGCGGGTACTGGGGTAAGGGTGGCGAACGAGTTAGGCGCAGGAAATGGCAAAGCAGCAAAATTTGCAACGCAAGTATCAGTGGCACAATCAACAATCATTGGGCTTATATTTTGCGTTCTGATAATGATATTCCATGAGCATATAGCATACATATTCACCACCAGCACTTCCGTCCTACAAGCCGTTGACAACATGTCATTACTCTTAGCTATCACCATTCTTCTCAACAGTGTACAACCCGTTTTGTCAGGAGTGGCTGTTGGATCCGGATGGCAAGCATACGTTGCATATATAAATATAGGATGCTACTACCTTATCGGGTTCCCACTCGGAATTATAATGGGATGGGTCTTCAAAAGTGGTGTAATTGGCATTTGGGGGGGCATGATTTTTGGTGGCACAGCAATTCAAACGCTGATACTGATCATAGTAACGATACGATGTGATTGGGAAAAGGAGGAGGAGAAAGCTTGCTTTCGTGTAAGATTGTGGAGACGGATAAGATGA 1485 0.4734 MGSLKGDSGHANGENLTEALLPTRDAQQQHQTDDEEQRFGDKLWLETRKLWLIVGPSIFSRLASFTMNVVTQAFAGHLGDVELAAISIANNVLVGFNFGLLLGMASALETLCGQAFGAKRYHLLGIYMQRSWIVLFMCCFLLLPFYVFATPLLKFLGQPDDVAEWSGVVAVWLIPLHFSFAFQFPMQRFLQCQLKTAVIAWVSLLGLVVNVVTSWLFIYVWDFGLYGAAISLDISWWVLVFGMYAYIAYGGCPLTWNGFSLEAFSGLWEFLTLSSASGVMLCLENWYYKILLLMTGQLENATIAVDALSVCMTINGWEMMIPLAFFAGTGVRVANELGAGNGKAAKFATQVSVAQSTIIGLIFCVLIMIFHEHIAYIFTTSTSVLQAVDNMSLLLAITILLNSVQPVLSGVAVGSGWQAYVAYINIGCYYLIGFPLGIIMGWVFKSGVIGIWGGMIFGGTAIQTLILIIVTIRCDWEKEEEKACFRVRLWRRIR* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0830 494 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
Gso4g0830 494 Pfam MatE 56 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso4g0830 494 Pfam MatE 278 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso4g0830 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 484 - -
Gso4g0830 494 PANTHER PROTEIN DETOXIFICATION 29 484 - -
Gso4g0830 494 TIGRFAM matE: MATE efflux family protein 56 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0830 Gso-Chr4 8796713 8828682 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0830 K03327 - gmx:100500204 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0830 4 8796713 8828682 Gso4g0830 4 8796713 8828682 ECH