Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0798 ATGAACCAAATCGACGACGGTCGAACCCTCTCCCCTCTGCCGGACCAGGTCCTGGAGAACGTCCTGGAAAGCGTGCTCCACTTCCTCACCTCCCGGCGCGACCGCAACGCCGCCTCACTGGTCTGCAAGTCCTGGTACCGCGCCGAGGCCCTCACCCGCACCGAGCTCTTCATCGGAAACTGCTACGCCGTGTCCCCCCGCCGCGCCACCGGCCGATTCCCCCGCGTCCGGTCCGTGACCATCAAGGGCAAGCCACGCTTCGCCGACTTCGACCTCATGCCCCTGAACTGGGGGGCCCACTTCACCCCCTGGGTCACCGCACTCTCCCAATCTTACCACTCCTCCCTCAACAAACTCCACCTCAAACGCATGTCCCTCACCGACCACGACCTCACCCTCCTCTCCCACTCCCTCCCCTCCTTCCAAGACCTCCTTCTCACGTGCTGCGAAGGCTTCGGCACCACCGCTCTCGCCGCCCTCGCCTCCAACTGCAGATTGCTGAGAGTGCTTGAACCAGTGGAATGCGTGGTGGAGGTTGGCGACGAGGAATTGGATTGGATATCGTGTTTTCCGGAGATTGACGCTCAGACATATTTGGAGTCTCTTGTTTTTGACTGCGTGGAGTGTCCAATTAACTTGGAGGCTTTGGAGAGGCTCGTGGCCCGGTCCCCCTCTTTGAGGAAGCTCAGGCTGAATCGTTATGTTTCCATGTCTCAGCTGCATCGCTTGATGCATCGAGCGCCGCAGTTGACGCATCTGGGAACTGGTTCGTTCAGTGCTTCGGAGCTGGATCAGGAACTGGATTTCGCGTCTGCGTTCGCGGCTTGTAAATCGTTGGTTTGTTTGTCTGGGTTCAGAGAGATTTGGCCGGATTATCTCCCTGCTATTTATCCAGCTTGTGCCAATCTCATATCCTTGAATTTCAGCTATGCTGATATCAGTGCGGATCAGCTCATATCGGTCATACGTCACTGTCATAAGCTGCAGACGTTTTGGGTCCTAGATACCATATGCGATGAAGGGCTTCAAGCAGTGGCTGAGACTTGCAAGGATTTGCGTGAGCTTCGGGTTTTCCCTGTCAATACCCGGGAGGAGATAGAAGGTCCCGTGTCTGAGGTGGGGTTTGAGGCGATTTCTCGAGGTTGTAGGAAACTGCAGTCGATTCTTTTTTTCTGCCAGAGGATGACGAATGCTGCCGTGGTAGCCATGTCGAACAACTGCCCGGATCTTGTGGTGTTTCGGTTGTGTATAATTGGGCGGTATAGGCCAGACCCAGAGACGCTAGAACCCATGGATGAGGGTTTTGGTGCCATTGTTATGAACTGCAAGAAGCTCACTCGGCTTGCTGTGTCTGGTTTGCTGACTGATCGGGCTTTTAACTACATTGGGACGTATGGGAAGTTGATTAGGACGCTGTCAGTTGCCTTTGCTGGAGACACTGATCTGGGACTCCAATATGTTCTTGAAGGATGTCCTAATCTGCAGAAGCTTGAAATCAGAGACAGTCCATTTGGGGATGGAGCTTTACGTTCTGGCTTGCATCATTTTTACAACATGAGGTTCCTCTGGATGTCCTCATGTAAGTTGACGCGCCAAGCTTGCCGGGAAGTCGCACGAATGCTGCCCCATCTGGTGTTGGAAGTCATCAATAGTGAAGAGGACAAAGCCGATGATATTGAGATTCTGTACATGTATCGGTCTCTGGACAGGCCACGGGATGATGCTCCAAAAGTTGTTACCATCCTTTGCTGA 1752 0.5394 MNQIDDGRTLSPLPDQVLENVLESVLHFLTSRRDRNAASLVCKSWYRAEALTRTELFIGNCYAVSPRRATGRFPRVRSVTIKGKPRFADFDLMPLNWGAHFTPWVTALSQSYHSSLNKLHLKRMSLTDHDLTLLSHSLPSFQDLLLTCCEGFGTTALAALASNCRLLRVLEPVECVVEVGDEELDWISCFPEIDAQTYLESLVFDCVECPINLEALERLVARSPSLRKLRLNRYVSMSQLHRLMHRAPQLTHLGTGSFSASELDQELDFASAFAACKSLVCLSGFREIWPDYLPAIYPACANLISLNFSYADISADQLISVIRHCHKLQTFWVLDTICDEGLQAVAETCKDLRELRVFPVNTREEIEGPVSEVGFEAISRGCRKLQSILFFCQRMTNAAVVAMSNNCPDLVVFRLCIIGRYRPDPETLEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFNYIGTYGKLIRTLSVAFAGDTDLGLQYVLEGCPNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACREVARMLPHLVLEVINSEEDKADDIEILYMYRSLDRPRDDAPKVVTILC* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0798 583 Pfam F-box 15 54 IPR041567 -
Gso4g0798 583 PANTHER F-BOX PROTEIN FBX14 10 581 - -
Gso4g0798 583 SUPERFAMILY RNI-like 37 545 - -
Gso4g0798 583 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 581 - -
Gso4g0798 583 Pfam Transport inhibitor response 1 protein domain 74 121 IPR041101 -
Gso4g0798 583 Gene3D - 7 53 - -
Gso4g0798 583 SMART LRR_CC_2 138 163 IPR006553 -
Gso4g0798 583 SMART LRR_CC_2 382 406 IPR006553 -
Gso4g0798 583 SMART LRR_CC_2 442 465 IPR006553 -
Gso4g0798 583 SMART LRR_CC_2 491 515 IPR006553 -
Gso4g0798 583 SMART LRR_CC_2 113 137 IPR006553 -
Gso4g0798 583 Gene3D Ribonuclease Inhibitor 55 582 IPR032675 -
Gso4g0798 583 SUPERFAMILY F-box domain 8 48 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0798 Gso-Chr4 8217120 8220018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0798 - - gmx:100799915 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0798 4 8217120 8220018 Gso4g0798 4 8217120 8220018 ECH