Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0780 ATGCGTGTTACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTTGTGCTGCCGGTGATTGGCTTCCTGATTCGCCGTAAATGGCAGGTCTCGGAGGCCAGGAAGGATGAGATCAAGAGGCTTTTGGTTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAAAGAGGCGTCCTATGAGTACGGCACAGCGGTTTCCGCCGCTCCGAGCAATCTATGTGCCGTGTGCTATTTTCCCGCCACCGCGCGCTGCGCGCAGTGCAAATCCGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGCCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTTGCTGGAGTGATGATGTAACAAGTGATCATGGCCGCAAGCTAGTAGAGCAAGGCTACTCTGGAATCCATGTTGAGAAGTCTGAAAGTGAAGGCAAAGAATGTAAAATAGCCTCTGAAAAGTCCCCAATTTCTGATATCTGCTTTTCTCCAAAAGTTTCACCTGGAAAGGATGGAAATATTAGAGTCGAGTCCCTTGCAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACGGGTTCTAATGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAATGAGCATGATGGATCCAAGGGACATACTTTTGTTGATCCTACCCTTGACATTCCTGATAACACTAGTGATGATTGCATGGGTGTAACCATGTCTACTTCACCAAAGTTTGCTACTTTGGTTGATTCAGTAGATGGTTTTTCTACAATGCATAAATTAAATCATACTGGACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGTAATCCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACAGTGGTTTCAGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACTAAGAATGACACTCATCCATCCTGTTCTGATGAATCCACAGGCAAAAGGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATGTCTCCTTTGCATGTAAGAGATACCAGGACAAATGATTCTGTATCTGATGATGCTTTTCCAAACTGTATTGGGAATGATATGGCAAGTTCAGGATCAGCATCATCTGAGAATGACAAGATCAATTCTTCGAAGGGGAGGAATTTCTCGTTCATCAACAGCAAAGTTTCCAGTGTTAGGAGTTATGTTACTCCAAGTGGTTCTGAATCTGATCAATTGGAATCTAAAGACAGCTCTGGGCCACCTTTATCATCTTTCTCCCCTCAATCCTCCAGTGTTGACAAAAATTCAGTTTGTGCAGATGCTTTGAACTTCCATATCTTGCAATCAACTGGCTCTAAGGTATCCAATCATGTTGTGGACAACCGTGGCAGCACCTTGAAGTCCACTGAAATTGGATTCCTGACACGTGAACTTGCTGATTCTAATTTAGCTTCTGGAACTGAAGAACATTCTCATTCCAGTACAAAACAAGGGAATAATGACATTGAATCTGGCACTCAAACTGTCACTTCTTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATCTGTCAAAGCACTTTCCATTAGCTGTTGGGAGTGATATTGCTGGAAGACATAATGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTATGCCCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACTCCACCTCTGACTGCTTATTTGCTTCAAGGATCACATTCGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATATTGAAGTCAAAGGACACAAAATCTGCGGTGTCTCCTATGGGCATAATCTCCCATCTACAGAATATTGGGAGTCAGCTTGCTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATTGGGCTCATTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCTATCAAAGATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGCGAGATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAGCACTGAGACTTTAGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCATATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGCGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATATCATGAATGCTGCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGATAGAGTCTTGACAAAAGGAGCATATATGCTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGAATACTGTCCCCAGATTCAAAACGTAAAGTCAGTGGAAAGACTCTTACAACGAAAGCAAGATCTATATCTACAAATTCTGGTGTTGCTGAACATGTCAACAGTTCCATTTCTCCAGATGACTCACCTGCCTTGGACTCTTTCTATTCAAAATTTCACCACCTGAAAAGGATTTTGGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATCAGCAGCAACTCCGATGAAGGTTCTTGTAGTACAGATAGCACCCGTGATTCAACCAGCACAGATGACTTCTCTGAATATCTTTTTGGTGATTCAGGGAATGGCTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACATCTTCATCATCCTCATCTTCTCCCTTGAATTTGCGACATTCGCCCCTATCTGATATGGACAGGAGAGAGAAAGAAACCCTAACTTGCGACAGTGCCCAACATGGAGCCTGGCAATGGCGGGCTGTAGGCGAAGATTAG 3243 0.4252 MRVTGDLGFSSLVLVVVCVVLPVIGFLIRRKWQVSEARKDEIKRLLVLAAEETARAEKEASYEYGTAVSAAPSNLCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTCWSDDVTSDHGRKLVEQGYSGIHVEKSESEGKECKIASEKSPISDICFSPKVSPGKDGNIRVESLAEGNITDSNSELSSNSFSGFSASTGSNDSSDDSSVCESIISNEHDGSKGHTFVDPTLDIPDNTSDDCMGVTMSTSPKFATLVDSVDGFSTMHKLNHTGPGFSKEESKLASNGNPGSSMWKGKTIEPSTVVSGFWDKALDSRGIKDDTKNDTHPSCSDESTGKRTVSESSFHFSFSTMSPLHVRDTRTNDSVSDDAFPNCIGNDMASSGSASSENDKINSSKGRNFSFINSKVSSVRSYVTPSGSESDQLESKDSSGPPLSSFSPQSSSVDKNSVCADALNFHILQSTGSKVSNHVVDNRGSTLKSTEIGFLTRELADSNLASGTEEHSHSSTKQGNNDIESGTQTVTSSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGSDIAGRHNDKSFFPYELFVKLYNSNKVELCPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGSHSKSCANKKWCFTCEFERLILKSKDTKSAVSPMGIISHLQNIGSQLANGREEDAHEFLRHVIDTMQSVCLMEAGVNALGSLEEDTTLMGQTFGGYLLSKIKCMRCGGKSERQERMMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVELDRVLTKGAYMLFYARCSPRAPRLIRNRILSPDSKRKVSGKTLTTKARSISTNSGVAEHVNSSISPDDSPALDSFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDFSEYLFGDSGNGWSSVWRNSDSDTSSSSSSSPLNLRHSPLSDMDRREKETLTCDSAQHGAWQWRAVGED* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0780 1080 MobiDBLite consensus disorder prediction 982 1011 - -
Gso4g0780 1080 Gene3D Cysteine proteinases 596 917 - -
Gso4g0780 1080 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1062 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 325 346 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 288 306 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 325 341 - -
Gso4g0780 1080 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Gso4g0780 1080 SUPERFAMILY Cysteine proteinases 599 910 IPR038765 -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 421 451 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 1030 1063 - -
Gso4g0780 1080 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 604 619 IPR018200 GO:0004843|GO:0006511
Gso4g0780 1080 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 603 908 IPR028889 -
Gso4g0780 1080 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Gso4g0780 1080 Pfam Ubiquitin carboxyl-terminal hydrolase 603 905 IPR001394 GO:0004843|GO:0016579
Gso4g0780 1080 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 981 1011 - -
Gso4g0780 1080 Coils Coil 39 59 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 1030 1048 - -
Gso4g0780 1080 CDD Peptidase_C19E 604 906 - -
Gso4g0780 1080 Gene3D - 64 117 - -
Gso4g0780 1080 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1062 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 504 528 - -
Gso4g0780 1080 MobiDBLite consensus disorder prediction 280 306 - -
Gso4g0780 1080 Pfam MYND finger 76 113 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0780 Gso-Chr4 8012312 8020621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0780 583 912 Miscellaneous Gene Families AT4G31670 50.453 4.31e-117 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0780 K11855 - gmx:100795674 1959.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0780 4 8012312 8020621 Gso4g0780 4 8012312 8020621 ECH
Gso4g0780 4 8012312 8020621 Gso6g0786 6 7416814 7424336 GST