Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0736 ATGAGCGTTTCACATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTCAGGTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAAGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACATTACCATATGACACCCAACAGTTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCCGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGCGGTACCATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCCGGAGCCCGGATAATGTCCTTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGATGCAAAACTGATTCATTTCCAGGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAATTGGGGCGCTTTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTACGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTGGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTCTACACTTAATAATGTTTACCAAGCAATGGGATTTTTGAAGAGACTGATAATTGATGCCAAATAA 1200 0.4375 MSVSHFAVLSSCCRPRFAPSFRSRASALRSRIRCCTTLTSTSSETPTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLISGKTKEEVVQECQNMNWGAFKPLLTDALIDHLHPIQVRYEEIMSDSGYLDGVLAQGARNAADIADSTLNNVYQAMGFLKRLIIDAK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0736 399 CDD TrpRS_core 54 342 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 Gene3D - 250 360 - -
Gso4g0736 399 Pfam tRNA synthetases class I (W and Y) 53 345 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso4g0736 399 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 29 390 - -
Gso4g0736 399 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 70 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso4g0736 399 Gene3D HUPs 55 389 IPR014729 -
Gso4g0736 399 SUPERFAMILY Nucleotidylyl transferase 53 390 - -
Gso4g0736 399 Hamap Tryptophan--tRNA ligase [trpS]. 52 391 IPR024109 GO:0004830
Gso4g0736 399 TIGRFAM trpS: tryptophan--tRNA ligase 52 390 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 PRINTS Tryptophanyl-tRNA synthetase signature 65 81 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 PRINTS Tryptophanyl-tRNA synthetase signature 115 134 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 PRINTS Tryptophanyl-tRNA synthetase signature 192 213 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 PRINTS Tryptophanyl-tRNA synthetase signature 257 267 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso4g0736 399 PANTHER BNAA04G15180D PROTEIN 29 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0736 Gso-Chr4 7297341 7304206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0736 K01867 - gmx:100780447 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0736 4 7297341 7304206 Gso6g0742 6 6847462 6854994 GST