Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0711 ATGGATTTCTATGGCAAGAGAACCCTCCTCAGCCTAATGGACACCGAAAAGCCAGAACAACCGCCACAATCCCCCGTTCACCTTCGCGTCCAAACCCACAGAGAGATTAGCGAACAAGACGTTCAGTTCAGTCCTCCAAGGCCTTCAAGCACTACTACTTCCGATGGCATGTTCCCTATGATAATGCCAGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCACCTTCTCTTCTTTATCACTGCATCGCTTCGCTCCACCGCCACGAAGGTAACATCTACGCAATTGCAGCTTCAAAGGGTTTAGTCTTTACCGGCTCAAATAGTAGTAGAATTCGCGTGTGGAAGCAACCAGATTGCATGGACAGAGGGTACCTCAAAGCAAGCTCTGGTGAGGTGAGAGCCATTTTGGCTTATAGCAACATGCTTTTCTCCACGCACAAGGATCACAAGATAAGAATATGGACCTTCACCGTTTCGGATAGCTTCAAGTCCAAGAAAGTAGGTACACTCCCTAGAAAAACTTCTATTCTTTTGTTCCCTTCAAGAGGAAAAAACACGCCAAAGCACAAAGATTCTGTGTCTTGCATGGCTTATTACCACTCTGAGGGTCTCTTGTACACTGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCAGATCGAAAATGCGTTGACTCGTTCGTGGCACACGAGGATAATGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGTTCCTCTGACGGGTCGGTGAAGATATGGAGAAGGGTTTACACTGAAGACTCTCACACTCTTACCATGACTCTAAAGTTCCAACCTTCACCGGTCAATGCCCTTGCATTGAGTTGCTCGTTCAACCACTGTTTCCTCTATTCAGGTTCCTCAGATGGGATGATAAATTTTTGGGAGAAGGAAAGGTTGTGTTATAGGTTCAACCACGGAGGGTTCTTGCAGGGTCACCGTTTTGCGGTTCTTTGTCTAGCAACGGTTGGGAACATGATATTCAGTGGGTCAGAGGACACGACAATTAGGGTTTGGAGGAGAGAGGAAGGGAGTTGCTACCACGAGTGTTTGACGGTTTTGGATGGACATAGAGGGCCAGTGAAGTGCTTGGCTGCGTGCCTCGAGATGGAAAAGGTTGTGATGGGGTTCTTGGTGTATAGTGCTAGTTTAGACCAGACATTTAAGGTATGGAGGATTAAGGTTTTGCCGGATGAAAAGATGTGCATGGACTATAGTGACCAGTGTGAAGCCGCCACTAGGGTCAAGATTAGGGACTACGACATGAGCCCGGTTCTGTCGCCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGCTATTTTCAGTAG 1368 0.4788 MDFYGKRTLLSLMDTEKPEQPPQSPVHLRVQTHREISEQDVQFSPPRPSSTTTSDGMFPMIMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKVGTLPRKTSILLFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVKCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSDQCEAATRVKIRDYDMSPVLSPSWVEKKLQGSYFQ* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0711 455 Gene3D - 176 436 IPR015943 GO:0005515
Gso4g0711 455 Gene3D - 67 175 IPR015943 GO:0005515
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Gso4g0711 455 MobiDBLite consensus disorder prediction 36 57 - -
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 363 IPR001680 GO:0005515
Gso4g0711 455 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Gso4g0711 455 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Gso4g0711 455 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Gso4g0711 455 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Gso4g0711 455 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Gso4g0711 455 Pfam WD domain, G-beta repeat 363 405 IPR001680 GO:0005515
Gso4g0711 455 Pfam WD domain, G-beta repeat 323 353 IPR001680 GO:0005515
Gso4g0711 455 Pfam WD domain, G-beta repeat 191 219 IPR001680 GO:0005515
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 353 - -
Gso4g0711 455 PANTHER OS01G0232200 PROTEIN 1 448 - -
Gso4g0711 455 SMART WD40_4 182 220 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 120 157 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 361 406 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 223 262 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 317 354 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 269 310 IPR001680 GO:0005515
Gso4g0711 455 SMART WD40_4 80 117 IPR001680 GO:0005515
Gso4g0711 455 CDD WD40 83 406 - -
Gso4g0711 455 MobiDBLite consensus disorder prediction 37 57 - -
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 261 - -
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 222 - -
Gso4g0711 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 261 IPR001680 GO:0005515
Gso4g0711 455 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 448 IPR045182 -
Gso4g0711 455 SUPERFAMILY WD40 repeat-like 82 408 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0711 Gso-Chr4 6980561 6982179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0711 191 410 Miscellaneous Gene Families AT5G08390 23.789 5.63e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0711 - - gmx:100814685 772.311