Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0682 ATGGGTTACATCCACCATGGAAGAACCGGTCTCAGGCACATACTCAGATTCAGAACCGCCACCGGCGTGGTCTCAAACTCCGGCAGATCGCAATCGCGCGCTGCATTCCCCTCCCATTCCCCTATCCTCGGCAACGTGCTTTTTTTCTCAACAGGCGATAAATACCTCAACGAAATTACCGCAGAGGTGGAACGCGACAGGCGCAGGGAGCGAAACGAGCGTTTGCGCCTCGGCCTCGACACCGCCGACATCGACACGGAGTCGGAGCAGGACTACATGGGCGTGGGGCCCCTCATCGCGAAGCTCGAGAAGGAGATGCTCAAGGAATCCCCCGAGCTGAACCGCTACGAGGAGCCCACCGACTCCGACGACGACTCCGACGAGGAAACCAAGGACGAGGCGGACAAGAAGATGAGTGACTTCGAGAAGAAAAGAGACAAACACACGGACCTGCTCAAGAACTTCATCGAAGCCGAAACCCTAGATGACGCGTTTAAGTGCATGACCAAAATAGACAACTTCGAAAACAAGCATTTCCGCCTCCGGTCCGAGTATAGGGTTATCGGCGAGCTCATGAATCGGCTTAAGGTCTCGACGGAGCTGAAGGACAAGTTTGTTTTGCAGAACAAACTTAATAGGGCGTTGAGGTTGGTGCGATGGAAGGAGGCTTATGATCCTGATAACCCTGCGAATTATGGTGTGATTCAGCGTGAGCAGCCGACGGCGGATGCGAAGGAAGAGGCTGAGTTCGAGAAGGAGAAGCAGAAGCAGATCGAGGAGGGAGATAATGCTGATGCTGATGATGATGATGAGCAGGAGTTTGATGACATGAAGGAGAAGGATAATGTACTGATGGCCAAACTTGAGGCTATTGATAGGAAGCTCGAGGAGAAGTTGGCGGAGCTCGAGTATACGTTTGGGAGGAAGGGGAAGGCGCTCGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAAAGAAAGCCTCTTTACCGGAAGGGTTTTGATACGAGATTGATAGACATGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGCAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAAAAGGCGTATGAGAAATGCTTCCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACGTCATATAAAAAGACCAAGGTTTATCTCTGGCCTGCTCCTACTACGACTGGCATGAAAGCCGGCAGATCAGTTGAAGCCATACTTCATTTAGCTGGTTTAAAGAATGTCAAGTCAAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTAAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAGTTTGGCAGGACTGTGGTTGAGAAGTATCTGTTGTGA 1494 0.4953 MGYIHHGRTGLRHILRFRTATGVVSNSGRSQSRAAFPSHSPILGNVLFFSTGDKYLNEITAEVERDRRRERNERLRLGLDTADIDTESEQDYMGVGPLIAKLEKEMLKESPELNRYEEPTDSDDDSDEETKDEADKKMSDFEKKRDKHTDLLKNFIEAETLDDAFKCMTKIDNFENKHFRLRSEYRVIGELMNRLKVSTELKDKFVLQNKLNRALRLVRWKEAYDPDNPANYGVIQREQPTADAKEEAEFEKEKQKQIEEGDNADADDDDEQEFDDMKEKDNVLMAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPAPTTTGMKAGRSVEAILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0682 497 Gene3D - 405 494 IPR014721 -
Gso4g0682 497 SUPERFAMILY dsRNA-binding domain-like 335 405 - -
Gso4g0682 497 MobiDBLite consensus disorder prediction 109 143 - -
Gso4g0682 497 SUPERFAMILY Ribosomal protein S5 domain 2-like 409 487 IPR020568 -
Gso4g0682 497 MobiDBLite consensus disorder prediction 262 276 - -
Gso4g0682 497 Pfam Ribosomal protein S5, C-terminal domain 419 486 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gso4g0682 497 MobiDBLite consensus disorder prediction 239 278 - -
Gso4g0682 497 PANTHER RIBOSOMAL S SUBUNIT 33 497 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g0682 497 Coils Coil 131 151 - -
Gso4g0682 497 Pfam Ribosomal protein S5, N-terminal domain 340 404 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso4g0682 497 Coils Coil 285 305 - -
Gso4g0682 497 Coils Coil 310 333 - -
Gso4g0682 497 MobiDBLite consensus disorder prediction 240 261 - -
Gso4g0682 497 PANTHER 28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL 33 497 - -
Gso4g0682 497 Gene3D - 290 401 - -
Gso4g0682 497 ProSiteProfiles S5 double stranded RNA-binding domain profile. 340 403 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0682 Gso-Chr4 6663863 6668481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0682 K02988 - gmx:100800084 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0682 4 6663863 6668481 Gso6g0682 6 6309889 6314086 GST