Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0674 ATGAGCGAGAGTCGACTATTGAATAAGATTCTGAATAAGTGTTCGAAGCGTCGTTTGCTTGATCAGGGAAAGCAAGTACATGGGGTGGTGGAGAAACTAGGGTTTCGACGTGATTTGGTTTTGAGTAATGATCTTATTGACATGTACGCAAAATGTGGTACCGTGGATTTTGCTTGTATGATGTTTGATCGGATGCCTGAAAGAAATGTGGTCTCTTGGACGGCTCTCATGTGTGGGTACCTGCAAAATAGTGATGCTAAAACCACTTTGCTGTTGTTTGTTAAAATGGGTCGTTCAGATGTTAAGCCGAACGAGTTTACACTTTCCACGAGTTTAAAAGCATGTGGGGTTCTGGGGATTCCTTGGAACGGAATGCAGATTCATGGGGTTTGTGCAAAATCTAATTTTGATTGGGTACCCGTTGTGGGCAATTCTATGATTGACATGTACTCCAAGTGTGGTATGGTTGGTGAGGCAGCCCGAGTGTTTAACACTTTGCCAGTGAGAAATGTTATAAGCTGGAATGCAATGATTGCTGGGTATACCAACGAAAGAAATGGTGAAGAGGCTTTGAATCTATTCCGAGAAATGCGAGAGAAGGGAGAAGTTCCTGATGGATACACATATTCAAGCTCATTAAAGGCGTGTAGTTGTGCTGATGCAGCAGGAGAAGGAATGCAAATACATGCTGCCTTAATCAGACATGGGTTTCCTTACTTGGCTCAATCAGCTGTTGCAGGTGCTCTGGTTGATCTTTATGTCAAATGCAGGCGCATGGCTGAAGCTAGGAAGGTGTTTGATCGAATTGAAGAGAAGAGTGTGATGTCTTGGAGCACACTAATTCTTGGTTATGCACAGGAAGATAATTTGAAAGAAGCCATGGACTTGTTTAGGGAGTTGAGAGAGAGCAGACATAGAATGGATGGGTTTGTACTCTCGAGCATCATAGGTGTATTTGCTGATTTTGCCCTTCTAGAGCAAGGGAAGCAAATGCATGCTTATACCATCAAAGTCCCGTATGGTTTATTGGAAATGTCAGTGGCTAATTCAGTTTTGGATATGTACATGAAATGCGGACTAACAGTTGAGGCAGATGCACTTTTCAGAGAGATGCTAGAAAGAAATGTGGTCTCATGGACTGTTATGATCACTGGTTATGGGAAACACGGTATAGGGAATAAGGCAGTTGAACTTTTTAACGAAATGCAAGAGAATGGAATTGAACCTGACAGTGTGACTTACTTGGCTGTGCTCTCAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTAAAAAATACTTCTCTATTTTATGTAGCAATCAGAAGATCAAACCGAAAGTAGAGCATTATGCTTGCATGGTTGATCTTCTTGGACGAGGTGGGCGCCTAAAGGAAGCAAAGAATCTCATTGAGAAAATGCCTCTAAAGCCAAATGTGGGCATATGGCAGACATTACTTAGTGTTTGTAGAATGCATGGAGATGTGGAAATGGGGAAACAAGTGGGAGAGATACTTTTGAGAAGGGAAGGTAATAATCCAGCCAACTATGTCATGGTGTCAAACATGTATGCTCATGCAGGGTATTGGAAAGAGAGTGAGAAAATAAGAGAAACCCTGAAGAGAAAGGGATTGAAGAAAGAGGCAGGACGTAGTTGGGTAGAGATGGACAAGGAAATCCACATTTTCTATAATGGAGATGGCATGCATCCTCTCATAGAGGAAATTCATGAAGTGTTGAAAGAAATGGAGAAGAGGGTGAAAGAAGAAATGGGCTATGTTCATAGCATAAATTTTTCATTGCATGATGTTGAAGAGGAGTCGAAGATGGAGAGTTTGAGGGTTCATAGCGAGAAATTAGCCATTGGGTTGGTTTTGGTTAGACGAGGATTAAAACTAAAAGGTGAAAGAGTGATTAGGATTTTCAAGAACTTGAGGGTTTGTGGGGATTGTCATGCATTCATCAAAGGTTTGTCAAAGGTTTTGAAGATTGCATTTGTGGTGAGAGATGCAAATAGGTTTCACAGATTTGAGAACGGTTTATGTTCGTGTGGAGATTACTGGTGA 2064 0.4167 MSESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFRRDLVLSNDLIDMYAKCGTVDFACMMFDRMPERNVVSWTALMCGYLQNSDAKTTLLLFVKMGRSDVKPNEFTLSTSLKACGVLGIPWNGMQIHGVCAKSNFDWVPVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0674 687 Gene3D Tetratricopeptide repeat domain 342 566 IPR011990 GO:0005515
Gso4g0674 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Gso4g0674 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gso4g0674 687 PANTHER - 1 645 - -
Gso4g0674 687 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Gso4g0674 687 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Gso4g0674 687 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Gso4g0674 687 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Gso4g0674 687 TIGRFAM PPR: pentatricopeptide repeat domain 349 377 IPR002885 -
Gso4g0674 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Gso4g0674 687 Pfam PPR repeat family 169 216 IPR002885 -
Gso4g0674 687 Pfam PPR repeat family 374 422 IPR002885 -
Gso4g0674 687 Pfam PPR repeat family 68 115 IPR002885 -
Gso4g0674 687 Gene3D Tetratricopeptide repeat domain 227 339 IPR011990 GO:0005515
Gso4g0674 687 Pfam E motif 492 554 IPR046848 -
Gso4g0674 687 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 645 - -
Gso4g0674 687 Pfam PPR repeat 248 273 IPR002885 -
Gso4g0674 687 Pfam PPR repeat 276 303 IPR002885 -
Gso4g0674 687 Pfam PPR repeat 144 166 IPR002885 -
Gso4g0674 687 Pfam PPR repeat 450 474 IPR002885 -
Gso4g0674 687 Gene3D Tetratricopeptide repeat domain 127 226 IPR011990 GO:0005515
Gso4g0674 687 Gene3D Tetratricopeptide repeat domain 2 117 IPR011990 GO:0005515
Gso4g0674 687 Pfam DYW family of nucleic acid deaminases 591 687 IPR032867 GO:0008270
Gso4g0674 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0674 Gso-Chr4 6571982 6575521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0674 10 687 Glycoside Hydrolase AT3G49170 37.971 5.88e-158 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0674 - - gmx:100806657 1389.02