Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0667 ATGTCTTCCTCTTATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAAATGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTTTGCGTATGAAAGAGCAAGCAATCACAAACCTCACTAAGCTTCTCACTGATGAAAATAGGGGAGAGGATCTGTGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGGACCTTTCTGAGACAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAAGTTAGGAGATTAGATGACAAGCTTCTTCTTGTGGATATAGATTTGCTGGAAAGCAAGCTGCATTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCACTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAAAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGCCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGAGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTACACAGGCACCTTTCATCCTTGTACGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACCGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCCAAGACTGATGCTATATATCCTGCTACTCTAGAGACCATTTCCAATGTTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1269 0.4326 MSSSYLPATTESLALANEAKDPSEAISILYRVLDDPSSSPDALRMKEQAITNLTKLLTDENRGEDLCSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMESKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0667 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 18 128 IPR040773 -
Gso4g0667 422 SUPERFAMILY TPR-like 131 325 IPR011990 GO:0005515
Gso4g0667 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Gso4g0667 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Gso4g0667 422 Coils Coil 126 146 - -
Gso4g0667 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Gso4g0667 422 SMART PINT_4 320 403 IPR000717 -
Gso4g0667 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Gso4g0667 422 Pfam PCI domain 285 386 IPR000717 -
Gso4g0667 422 PANTHER - 2 422 - -
Gso4g0667 422 Gene3D - 46 421 - -
Gso4g0667 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0667 Gso-Chr4 6502627 6506632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0667 K03036 - gmx:100796188 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0667 4 6502627 6506632 Gso6g0668 6 6162890 6166920 GST
Gso4g0667 4 6502627 6506632 Gso17g1598 17 25303131 25316514 PCT