Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0599 ATGGCTGCTACTGCTCCTTCATCTGCATACCCTTTTGGAATCCCTTTCCACTCCCACTCTCGAAGAGTGGATTGCTCAACCTCAACCTCCATGTTCCCCATTCACGCAGACCTCTCAACAATTTCTATGTGCCCACGTTCTGCTTCAAAGGGATTAGTTGATCAAGTATATGCACAGCTTGATAATGATGATTACTACAGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTCAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTCAGGTACACAAATATCACCGAAAGCAAGTATGGCAGTGGTTGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTAGACAAAATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTCATGACGACAATGAGAAGAAAGAATGGTCTTTCTGGTGTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAGCAGTATTTCTGCTGGACTTGGCATGGCAGTTGCGCGGGATATTAAGGGGAGGCGAGAACGCGTAATTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGCCGTCACTCTTTACTTCCAAAAATTGAGGAGGGCCCAAAGACATTTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGGAGATTTAGAGAAGCTGCTAAGGGTGTTACGAAACGAATTGGTAGAGGTATGCATGAATTGGCAGCTAAAGTGGATGAATATGCTCGTGGTATGATGGGTCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAAGATCTCATATGTGTTCTGCAAGAAGTAGCTTCCCTGGATTCAATGGGACCTGTCTTGGTACATGTGATAACTGACGAAAATCAGGGAGATGAAAACAGTCAGAAAAGTGATATATCAGATGGGCAGCAGGATGAAGGTTCTGTTAAATCTGATTCGTTAGATAATCCTGTTCGGCCTCAAACATATGGCAATTGCTTTGTGGAGACTTTGGTTGTAGAAGCAGAGAAAGACAAAGATATTGTTGTTGTTCATGCTGGATTAACGATGGAGCCATCACTTGAACTGTTTCAGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAACAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGTGTCATAGCTTCCTCCTTTCTACAAAGAGCCTATGACCAGGTGGTGCATGATGTTGATCAACAGAGAATTCCAGTGCGTTTTGTTATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCAATGTGGAGCATTTGATATAAACTTTATGTCATGCTTACCAAACATGATTGTCATGGCCCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTCGCATCAATAGTCAGCCTATCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGAGAGGGTACACTATAAGCGATGGAATCCCCATCAAGATAGGAAGAGGAAGAGTTCTTGTTGAAGGCAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTCGCCAAGCTTGGCATTGAGGTAACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCACTCTTTTCTAGTTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCAGGTTGCTCAGTTTATTGCGGTTAATGGACTACTCGATGGAAGAATTCAGTGGCGACCAATTGTTTTACCAGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGATCAAGCAGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTACTAGGCCGTACCCGTGAAGCTCTCCTATTTATGTGTTCCTGA 2151 0.437 MAATAPSSAYPFGIPFHSHSRRVDCSTSTSMFPIHADLSTISMCPRSASKGLVDQVYAQLDNDDYYREKVPTPILDMVENPLCLKNLSLQELKQLAVEIRSDLSSIMSGTQISPKASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGVTSRFESEYDAFGAGHGCSSISAGLGMAVARDIKGRRERVIAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTFVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENSQKSDISDGQQDEGSVKSDSLDNPVRPQTYGNCFVETLVVEAEKDKDIVVVHAGLTMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCVIASSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDINFMSCLPNMIVMAPSDEVELMHMVATATRINSQPICFRYPRGALVGRGYTISDGIPIKIGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLVTVEEGSIGGFGSQVAQFIAVNGLLDGRIQWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALLFMCS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0599 716 CDD TPP_PYR_DXS_TK_like 401 554 - -
Gso4g0599 716 Gene3D - 573 704 IPR009014 GO:0003824
Gso4g0599 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 7 715 IPR005477 GO:0008661|GO:0016114
Gso4g0599 716 CDD TPP_DXS 116 364 IPR005477 GO:0008661|GO:0016114
Gso4g0599 716 Pfam Transketolase, C-terminal domain 573 696 IPR033248 -
Gso4g0599 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 394 583 IPR029061 -
Gso4g0599 716 Gene3D - 67 366 - -
Gso4g0599 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 7 715 - -
Gso4g0599 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 74 705 IPR005477 GO:0008661|GO:0016114
Gso4g0599 716 SMART Transket_pyr_3 395 560 IPR005475 -
Gso4g0599 716 SUPERFAMILY TK C-terminal domain-like 568 704 IPR009014 GO:0003824
Gso4g0599 716 Pfam Transketolase, pyrimidine binding domain 396 557 IPR005475 -
Gso4g0599 716 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 77 702 IPR005477 GO:0008661|GO:0016114
Gso4g0599 716 MobiDBLite consensus disorder prediction 369 391 - -
Gso4g0599 716 MobiDBLite consensus disorder prediction 360 391 - -
Gso4g0599 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 359 IPR005477 GO:0008661|GO:0016114
Gso4g0599 716 Gene3D - 395 562 - -
Gso4g0599 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 457 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0599 Gso-Chr4 5770242 5776869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0599 433 655 Acyl Lipid Metabolism Gene Families AT1G55510 24.268 6.61e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0599 K01662 - gmx:100787937 1418.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0599 4 5770242 5776869 Gso6g0597 6 5509923 5516144 GST