Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0531 ATGGCAACCAGAAGAACTCCGACGCTAACAAAATCCGTTTTCGCCGCCGTAACCGCTTCTAGGACTTCTCGCTCTCGCTCCCATTCCGCGCGACGACTCTTCCCCGCCATCCCTCGCGCTTCGGAGAATTCCCTTTCTCGGTCTCAGATTATCGACGCCACCAATGTCGCCTCCGCCAAGTTCCTTTCTCGCTCTTTCACTCGCACCTTCCACGCCACTAATCCCTCCCTCCGCTCCGCCGCAAGCTCTCAGGTGGCGCAGACGGACTTCACAGATATGGCATGGGAGGGGATTGTTGGTGCTGTTGATGCGGCGCGAGTTAGTAAACAACAAATTGTGGAGTCTGAGCACTTAATGAAAGCTCTTTTGGAGCAAAAGGATGGCTTGGCTAGAAGGATATTTACTAAGGCAGGATTGGACAACACGTCCGTTCTACAGGCTACTGAAGATTTTATAGCTAAGCAACCTAAGGTTACGGGTGACACTAGTGGTCCTGTAGTGGGCTCGCATTTTAGCTCCCTCTTGGACAATTCTCGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAACACCTTTTGCTAGCATTTCATTCTGATAAGAGATTTGGACAACAGTTGTTTAAGAATCTTCAGCTTAGTGAGAAAGCTTTGAAGGATGCTGTACAAGCTGTTCGGGGAAGTCAAAGAGTGACCGATCAAAATCCAGAGGGGAAATATGAAGCATTGGACAAGTATGGAAATGATCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCCGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCTGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGTGATGTTCCAGAGCCATTGATGAATCGAAAGTTGATCTCCCTTGATATGGGTTCATTGCTTGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACCGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGCTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATTACAGAACGCTTCTTACCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAACTGAAGATGGAGATCACCTCTAAGCCTACGGAATTGGATGAGATAGACAGGGCTATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTTGAAAACGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGACAGAACAATGGGACAGCGAAAAAGTTTTTATGACTCGGATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAAGTGACTTCCGAAACTCTGGACAATCTTTACTCCGAGAAGAGGTCACTGACCTTGATATTACAGAGATTGTTAGCAAATGGACCGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTCTTGCTGGAACAGGTTCTTCACAAGAGGGTGGTTGGTCAGGATACTGCTGTAAAATCTGTCGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCGACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTCTAGTTGGAGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGCGGTCAGCTAACTGAAGTGGTCAGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATCTTGTTACAGTTGTTGGATGACGGAAGGATTACTGACTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGTTCTCATTACATACTTGACACTCTTCGTAGTACACAAGATGATAAAACTGCAGTCTATGATCAGATGAAAAGACAAGTTGTTGAGTTGGCTAGGCAAACTTTCCGTCCAGAGTTCATGAATCGCATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCGAACAGATCAGCAAAATAGTGGAGCTCCAGATGGAGCGAGTGAAAAACAGGCTCAAGCAGAAGAAAATTGATCTTCATTACACAGAAAAAGCTGTTAAACTTCTTGGTGTACTGGGTTTTGATCCAAATTTTGGAGCTAGACCAGTTAAAAGAGTGATACAGCAATTGGTTGAAAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACTCAATCATTGTTGATGCTGATGTGACTCTATCAGGCAAAGAACGTTCTCCTCTAAATAAACTGCTTATTAAGAAGTTGGACAGCCCTGATGCGGATGCCATGGTCGTCAATGATTAA 2925 0.4342 MATRRTPTLTKSVFAAVTASRTSRSRSHSARRLFPAIPRASENSLSRSQIIDATNVASAKFLSRSFTRTFHATNPSLRSAASSQVAQTDFTDMAWEGIVGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATEDFIAKQPKVTGDTSGPVVGSHFSSLLDNSRKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKALKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELTEQWDSEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLSDFRNSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDTAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILDTLRSTQDDKTAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHYTEKAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVTLSGKERSPLNKLLIKKLDSPDADAMVVND* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0531 974 Gene3D - 233 426 IPR027417 -
Gso4g0531 974 ProSitePatterns Chaperonins clpA/B signature 1. 378 390 IPR018368 GO:0005524
Gso4g0531 974 Coils Coil 556 576 - -
Gso4g0531 974 CDD AAA 265 422 - -
Gso4g0531 974 PANTHER BNAC09G42450D PROTEIN 63 969 - -
Gso4g0531 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 633 IPR027417 -
Gso4g0531 974 PANTHER ATP-DEPENDENT CLP PROTEASE 63 969 - -
Gso4g0531 974 Coils Coil 583 617 - -
Gso4g0531 974 Pfam AAA lid domain 426 528 IPR041546 -
Gso4g0531 974 Gene3D - 860 953 - -
Gso4g0531 974 Pfam C-terminal, D2-small domain, of ClpB protein 860 940 IPR019489 -
Gso4g0531 974 SMART AAA_5 282 426 IPR003593 -
Gso4g0531 974 SMART AAA_5 685 827 IPR003593 -
Gso4g0531 974 ProSitePatterns Chaperonins clpA/B signature 2. 719 737 IPR028299 -
Gso4g0531 974 SUPERFAMILY Double Clp-N motif 89 240 IPR036628 -
Gso4g0531 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 941 IPR027417 -
Gso4g0531 974 Coils Coil 518 545 - -
Gso4g0531 974 ProSiteProfiles Clp repeat (R) domain profile. 85 230 IPR004176 -
Gso4g0531 974 Pfam AAA domain (Cdc48 subfamily) 684 853 IPR003959 GO:0005524|GO:0016887
Gso4g0531 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 689 707 IPR001270 GO:0005524
Gso4g0531 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 734 752 IPR001270 GO:0005524
Gso4g0531 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 763 781 IPR001270 GO:0005524
Gso4g0531 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 796 810 IPR001270 GO:0005524
Gso4g0531 974 Gene3D - 87 232 IPR036628 -
Gso4g0531 974 Coils Coil 496 516 - -
Gso4g0531 974 Gene3D - 637 858 IPR027417 -
Gso4g0531 974 CDD AAA 659 815 - -
Gso4g0531 974 Pfam ATPase family associated with various cellular activities (AAA) 288 421 IPR003959 GO:0005524|GO:0016887
Gso4g0531 974 SMART ClpB_D2_small_2 860 954 IPR019489 -
Gso4g0531 974 Gene3D - 427 632 IPR027417 -
Gso4g0531 974 Pfam Clp amino terminal domain, pathogenicity island component 180 229 IPR004176 -
Gso4g0531 974 Pfam Clp amino terminal domain, pathogenicity island component 101 152 IPR004176 -
Gso4g0531 974 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 90 943 IPR017730 GO:0005737|GO:0009408|GO:0042026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0531 Gso-Chr4 5088755 5095882 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0531 K03695 - gmx:100782242 1850.1