Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0530 ATGGTGATACGCATGTCGAAGGCTTACGATGCAGGTGAACTGATCTTGGTCTCGAAGCACATCAGAACCCTAGATTCCCTCCTCCGCTTCCACGCGCTGACGGTTACAAGCGGCCACTCCACGAACCTTTTCATGGCCTCAAAGCTGATATCTCTATACGACTCTCTGAACAACGATCCCAGTTCATGTTCCACACTCTTCCACTCTCTTCCCTCCAAAGACACATTCCTCTACAACTCCTTCCTCAAATCCCTCTTCTCCCGCTCCCTCTTCCCTCGCGTCCTCTCCCTCTTCTCCCACATGCGCGCCTCCAACCTCTCCCCCAACCACTTCACCCTCCCCATCGTCGTCTCCGCCGCCGCGCACCTCACGCTCCTCCCCCACGGCGCATCACTCCACGCCCTCGCTTCCAAAACCGGCCTCTTCCATTCTTCCGCTTCCTTCGTTTCACTCTACTCGCGCTGTGGCCGAATGGATCTTGCACGCAAGGTGTTCGATGAAATTCCCAAAAGGGACGTGGTTGCTTGGACTGCACTCATCATCGGGCACGTGCACAACGGGGAGCCTGAGAAGGGTTTGAGGTGTCTCCGTCACGTGCATGGGGTTGTTGAAGATGATGAGAAGCCCAATGCTAAAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAACCTCGGTGCTGTGAGCGAAGGCTCGTGTTTGCATGGGGTGGTTGTCAAAAATGGGGTTGCTTCTTTTATACAGTCTTCGGTTTTGGATATGTATTCCAAATGTGGGGTTCCTCGAGAAGCGTATCGGTCCTTTTGTGAGGTGATTCACAAAGATCTTCTGTGCTGGACGTCCGTCATCGGGGTTTATGCGAGGATTGGGATGATGGGGGAGTGTCTGAGGTTGTTTAGGGAAATGCAGGAAAATGAAATACGCCCAGATGGGGTTGTTGTTTGTTGTGTGCTTTCGGGCTTTGGTAATTCCATGGATGTGTTTCAAGGGAAAGCGTTTCATGGAGTCATTATAAGGAGATATTATGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACTGCAAGTTTGGAATGTTAAGTTTGGCAGAGAGGATTTTTCCGTTGTGCCAAGGGAGTGGAGATGGCTGGAACTTTATGGTTTTTGGGTATGGTAAAGTAGGGGAGAATGTGAAATGTGTTGAGCTCTTCAGGGAGATGCAGTGGTTAGGTATTCATTCCGAAACAATTGGCATAGCTTCGGCAATTGCCTCATGTGCCCAGTTAGGAGCAGTTAATTTGGGTAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAAAAACATTTCAGTCACCAACTCACTCATAGAGATGTATGGAAAATATGGTAAGATGACCTTTGCTTGGAGGATATTTAATACATCGGAGACGGATGTTGTATCATGGAACACTTTGATTTCATCTCATGTTCACATCAAACAGCATGAAGAGGCTGTAAATTTATTTAGTAAAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACACTTGTGGTAGTGCTTTCAGCTTGTTCTCACCTTGCATCTCTAGAGAAAGGAGAAAGGGTTCACTGCTACATAAATGAAAGTGGTTTTACACTCAATTTACCTCTCGGCACGGCATTGATTGATATGTATGCTAAGTGTGGGCAACTGCAAAAATCAAGAATGGTATTTGACTCTATGATGGAGAAGGATGTGATTTGCTGGAATGCGATGATTTCAGGCTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCAACATATGGAGGAATCAAATGTTATGCCCAATGGAATTACCTTCCTCTCTCTTCTCTCAGCATGTGCCCATGCAGGGCTTGTTGAAGAAGGCAAATACATGTTTGCCAGAATGAAGAGTTATTCTGTGAATCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTATGGTAATGTACAAGAAGCAGAAGCCATGGTCCTATCAATGCCCATTTCTCCGGATGGTGGTGTTTGGGGAGCTTTGTTAGGTCATTGTAAAACTCACAATCAAATTGAGATGGGAATAAGAATTGCGAAGTATGCTATTGACTTGGAACCAGAAAACGACGGCTACTATATAATCATGGCCAATATGTATAGCTTCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGACGATGAAAGAGAGGTGTTCAATGGGAAAGAAAGCTGGTTGGAGTCTGCTCTGA 2265 0.4623 MVIRMSKAYDAGELILVSKHIRTLDSLLRFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHSSASFVSLYSRCGRMDLARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVCCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFPLCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLIEMYGKYGKMTFAWRIFNTSETDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEAENVRRTMKERCSMGKKAGWSLL* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0530 754 Pfam E motif 692 750 IPR046848 -
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 441 545 IPR011990 GO:0005515
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 333 440 IPR011990 GO:0005515
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 552 752 IPR011990 GO:0005515
Gso4g0530 754 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Gso4g0530 754 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Gso4g0530 754 TIGRFAM PPR: pentatricopeptide repeat domain 550 577 IPR002885 -
Gso4g0530 754 TIGRFAM PPR: pentatricopeptide repeat domain 477 511 IPR002885 -
Gso4g0530 754 TIGRFAM PPR: pentatricopeptide repeat domain 277 309 IPR002885 -
Gso4g0530 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Gso4g0530 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Gso4g0530 754 SUPERFAMILY TPR-like 478 734 IPR011990 GO:0005515
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 238 332 IPR011990 GO:0005515
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 15 127 IPR011990 GO:0005515
Gso4g0530 754 Gene3D Tetratricopeptide repeat domain 141 230 IPR011990 GO:0005515
Gso4g0530 754 PANTHER - 145 321 - -
Gso4g0530 754 PANTHER - 378 753 - -
Gso4g0530 754 PANTHER - 325 470 - -
Gso4g0530 754 PANTHER - 22 230 - -
Gso4g0530 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Gso4g0530 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Gso4g0530 754 Pfam PPR repeat family 475 522 IPR002885 -
Gso4g0530 754 Pfam PPR repeat family 575 623 IPR002885 -
Gso4g0530 754 Pfam PPR repeat 649 673 IPR002885 -
Gso4g0530 754 Pfam PPR repeat 277 305 IPR002885 -
Gso4g0530 754 Pfam PPR repeat 148 172 IPR002885 -
Gso4g0530 754 Pfam PPR repeat 174 197 IPR002885 -
Gso4g0530 754 Pfam PPR repeat 378 406 IPR002885 -
Gso4g0530 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0530 Gso-Chr4 5082531 5088250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0530 147 752 Glycoside Hydrolase AT3G49170 31.884 1.76e-88 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0530 - - gmx:100780090 1515.36