LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g0519	ATGGGTCACGTAGGTTCCAGCAAGGACGGCACCAAGGTGGGGCTGTCCGCTGCTGCGATGGACATCGACGACGACGACGACGACGACCTCGGCGACGTCGACCTAGACCCTACGAGCTCCGAAATCCTTGAAGAACTCGGCGAAGACATGGTGAAATACTGGTGCAAGAAAGCGTCGATGCTGTTCTTCGACGAGTACGGTCTGATCAGCCACCAGATCAACTCCTTTAACCACTTCGTCGCCATCGGCCTCCAAAACACCTTCGACTCCTTCGGAGACCTAGTCGTAACTCCCGGTTTTGACCCCTCCAAGAAGGGAGAAAACGAACACTTCCGTTACGCCTCCGTTAAGTTCGGCAAGGTGAAGCTCGACAAGCCCATGTTCTGGGGCGGTGAAGGGAATGCGCAGGAGTTCAAGATGCTTCCGAGACACGCGAGAATCCAGAGGATGACCTACGCTTCCAAAGTCAAAATCCAAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACTGGGAAAGAGGAGTTCCTTGATAGAGAGATTATGAAGGAAGACGAGAGGGAAATCATCATTGGGAGATTGCCAGTCATGGTCAAGTCTGATTTGTGCTGGATGAAAGACGCGGAAAAGGATGATGATGAATTTGACCATGGAGGTTATTTTATCGTTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTATGAACAGTCCAGGGTGGATGATTGCCTACAAGTCACAGATGAAGAGAAACAGGATGGTTATTAAACTGGTAGGCAATTCCAGGAGTGAAGAAGTGGAGAATGGGGACATGTGTCTTACTGTATATTTTTTGTCTGTTGAGGTTCCTGTGTGGGTACTGTTTTTTGCTCTCGGTGTCTCATCTGACAAAGAGATTGTAGATCTCATTGGTTGTGGCAATGATGATGTCAGAATTCAGAATATCCTCTTTGCATCTGTTCGTGATGCTGATGAGAAATGTGGAGCATTTCGAAGAGTTAGGAATGCTGTTCAATATTTAGAAAAATGTGTAAAAAGTGTTCAATTTCCACCTTCGGAATCTATGCAGGAGTGCCTTGAAATGTATGTCTTTCCTGGAATTAGTGGTTTAAATAGAAAGGCGCGCTTCCTTGCATATATGGTGAAAGGTCTCTTGCTGGCTTATACTGGCCGCAGAAAATGCGACAACAGGGATGATTTTCGAAATAAGAGGCTTGAATTGGCCAGTGAGCTTCTTGACCGTGAGTTGAAAGTGCATGTTGCACATGCTCGGAAGCGAATGGCAAAGGCTTTGCAGAGAGACCTTTATGGAGATAGGGACGTACGCCCAATTGAACATTATCTTGACGCGTCCATAATTACAAATGGCTTGCAAAGGGCATTTTCAACAGGAGCGTGGTCACATCCGTATAAGAGGATGGAAAGGATCTCAGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTGCAAACCATGGCTGAGTTAAGAAGAGCAAGGCAGCAGGTCCAGTACACAGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAAAATTTGTCTGTCACAGGATTAGTAAGTACTGATGTAACTGACGTAACTGAATCTATACTGCCAAAATTGGTGGATTGTGGAATGCAAGAACTTGTTGATGATACTTCCACTCATCTTGGCAGCATGGACAAAGTCCTCCTAAATGGTGATTGGGTTGGAGTGTGTCCCGATTCCAGTTCGTTTGTGGCAGAGCTACGAAGTAGAAGACGCAGAAATGAGCTGCCTCATCAGGTGGAAATCAAGAGAGACCAATCTCAGCATGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTTGTTGGTAATCTACTGAAGATTAAAGGATTTAAATCAGACCGTTACTCTTTCCAGTCTCTATTGGACAAAGGTGTTATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGTTGTACTGCCTGGGGTGTTGAGTATTTATTTGGAAAAGAAGGAAAACGATCTGTAAAGTACACTCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTGCTCTACCAGTCTCAGAAGCACTCCTCACAGGCAATTGGCTTTTCTACAACAAACCCGAACATTAGAGTTGATACTTTGTCTCACCAGTTACACTATCCCCAAAAGCCCCTTTTTCGAACAATGACTTCAGATTGTCTTGGAAAACCAGACCATTCACTGGGTCAAAGTAAAATACCTCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTGATGAACCGTGCTTCACTGCAGCGTGGTATGTTCAGGTCTGAGCACATAAGGAGTTACAAATCTGAAATTGACAATAAGGAATCTTCAGATAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGCAAAGCTACAAAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGCGCTAATCTCCAAAGCGGTGATATTATTATTGGGAAGTGTGCTGAATCCGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGACGAGGGGAAAAATTTTGCTGTGGTTTCATTAAGACAGGTTCGTAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCATGGTCAAAAGGGAGTTTTGGGATTTCTGGAGTCTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTCATAAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTATACTGAAACAAGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACTGAACAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTTCGATCACTCATTTTTATGGGACCAACATTTTACCAACGTCTGCACCATATGTCTGAAGACAAAGTGAAATTCCGGAACACTGGTCCAGTTCACCCGTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAGATGGAGCGTGATTGCCTAATAGCTCATGGTGCATCAGCCAACCTGTATGAACGCCTGTTTACACTCAGTGACTCCTCTCAGATTCACATCTGCAGCAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCAGTGTCTGGTGGACGGAAAATACGAGGACCTTATTGCCGTCACTGTGAATCTGCGGATGACATTGTGGTGGCCCATGTCCCGTATGGGGCTAAGTTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGTTAG	3609	0.4483	MGHVGSSKDGTKVGLSAAAMDIDDDDDDDLGDVDLDPTSSEILEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKKGENEHFRYASVKFGKVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGLVSTDVTDVTESILPKLVDCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC*	1203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g0519	1202	Gene3D	-	759	948	IPR014724	GO:0003899
	Gso4g0519	1202	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	51	1199	-	-
	Gso4g0519	1202	PANTHER	DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED	36	1199	-	-
	Gso4g0519	1202	Gene3D	-	729	1085	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Gene3D	RNA polymerase alpha subunit dimerisation domain	1086	1200	-	-
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 4	597	657	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 6	728	1099	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	36	1199	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 5	673	719	IPR007647	GO:0006351
	Gso4g0519	1202	Gene3D	RNA polymerase Rpb2, domain 2	253	409	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 2	277	421	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Pfam	RNA polymerase beta subunit	67	458	IPR007644	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	ProSitePatterns	RNA polymerases beta chain signature.	952	964	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 3	500	557	IPR007645	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Pfam	RNA polymerase Rpb2, domain 7	1101	1199	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
	Gso4g0519	1202	Gene3D	-	61	244	-	-
	Gso4g0519	1202	Gene3D	-	410	596	-	-
	Gso4g0519	1202	CDD	RNA_pol_B_RPB2	68	1198	IPR015712	GO:0003899\|GO:0006351\|GO:0032549

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g0519	Gso-Chr4	4950749	4956337	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g0519	-		K16252	gmx:100815934	2388.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0519	4	4950749	4956337	Gso6g0514	6	4691787	4697320	GST